RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 ZNF799Q96GE5 643 aa17.26■□□□□ 0.35
SHKBP1-222ENST00000600320 DCLRE1CQ96SD1 692 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-222ENST00000600320 ERVK13-1Q9NX77 482 aa17.26■□□□□ 0.35
SHKBP1-222ENST00000600320 DIMT1Q9UNQ2 313 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-222ENST00000600320 UTP20O75691 2785 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 IRGMA1A4Y4 181 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 ICMTO60725 284 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 LIMS3P0CW19 117 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 LIMS4P0CW20 117 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 PRF1P14222 555 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 CRHBPP24387 322 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 DCKP27707 260 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 HSD11B1P28845 292 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 PCSK6P29122 969 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 CX3CR1P49238 355 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 ETV1P50549 477 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 UCP2P55851 309 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 TPTEP56180 551 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 CSNK2BP67870 215 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 ST3GAL4Q11206 333 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 MED21Q13503 144 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 ZNF672Q499Z4 452 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 TP53I3Q53FA7 332 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 DEGS2Q6QHC5 323 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 VHLLQ6RSH7 139 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 ZNF283Q8N7M2 679 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 TMEM80Q96HE8 168 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 ALG8Q9BVK2 526 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 JAM3Q9BX67 310 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 MROQ9BYG7 248 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 CLEC4MQ9H2X3 399 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 POFUT1Q9H488 388 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 SCN3BQ9NY72 215 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 POU2F3Q9UKI9 436 aa17.25■□□□□ 0.35
SHKBP1-222ENST00000600320 PTGES3LE9PB15 166 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 ZNF254O75437 659 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 C21orf33P30042 268 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 THBS4P35443 961 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 ZNF121P58317 390 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 SLC35A2P78381 396 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 GALEQ14376 348 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 CDONQ4KMG0 1287 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 DRAM2Q6UX65 266 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 COLCA1Q6ZS62 124 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 PRSS45Q7RTY3 260 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 TMEM200AQ86VY9 491 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 NUP37Q8NFH4 326 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 ABHD4Q8TB40 342 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 DOK1Q99704 481 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 DUSP21Q9H596 190 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 INPP5EQ9NRR6 644 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 TBCCD1Q9NVR7 557 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 ERVK-18Q9QC07 812 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 EIF3KQ9UBQ5 218 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 CLEC2DQ9UHP7 191 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 TPRKBQ9Y3C4 175 aa17.24■□□□□ 0.35
SHKBP1-222ENST00000600320 METTL15A6NJ78 407 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SRSF10O75494 262 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 PNPP00491 289 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 KRT8P05787 483 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 CDK1P06493 297 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SSTR2P30874 369 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 GLRXP35754 106 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SLC6A9P48067 706 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 RIDAP52758 137 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 OR12D2P58182 307 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 KRTAP10-9P60411 292 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 PSMA6P60900 246 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 MFGE8Q08431 387 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SNAI3Q3KNW1 292 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 RBM48Q5RL73 367 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 STX19Q8N4C7 294 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 YIPF7Q8N8F6 280 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 OR1J1Q8NGS3 322 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SNX33Q8WV41 574 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 TMEM171Q8WVE6 324 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 RNF166Q96A37 237 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 C1QTNF5Q9BXJ0 243 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 ISG20L2Q9H9L3 353 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 BRD7Q9NPI1 651 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 CISD1Q9NZ45 108 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 ZNF319Q9P2F9 582 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 STARD10Q9Y365 291 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 EXOSC1Q9Y3B2 195 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SPEF1Q9Y4P9 236 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 N6AMT1Q9Y5N5 214 aa17.23■□□□□ 0.35
SHKBP1-222ENST00000600320 SULT1C4O75897 302 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 LCATP04180 440 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 LCKP06239 509 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 PPP1CBP62140 327 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 SPATA46Q5T0L3 261 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 OR2G6Q5TZ20 316 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 LIPNQ5VXI9 398 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 FAM57BQ71RH2 274 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 SLC25A40Q8TBP6 338 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 APOBEC3DQ96AK3 386 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 C4orf36Q96KX1 117 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 SIGLEC11Q96RL6 698 aa17.22■□□□□ 0.35
SHKBP1-222ENST00000600320 NIPAL2Q9H841 368 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms