RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 SLC27A4Q6P1M0 643 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 CFAP77Q6ZQR2 320 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 RFLNBQ8N5W9 214 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 CYB561A3Q8NBI2 242 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 AQP11Q8NBQ7 271 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 OR8G5Q8NG78 346 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 OR8D4Q8NGM9 314 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 OR13G1Q8NGZ3 307 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 ITLN1Q8WWA0 313 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 POP5Q969H6 163 aaKnown RBP12.73□□□□□ -0.37
LIG1-215ENST00000597901 CLPTM1LQ96KA5 538 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 ZNF582Q96NG8 517 aaPredicted RBP12.73□□□□□ -0.37
LIG1-215ENST00000597901 GAL3ST1Q99999 423 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 TSSK6Q9BXA6 273 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 C1QTNF5Q9BXJ0 243 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 C1orf21Q9H246 121 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 METTL17Q9H7H0 456 aaPredicted RBP12.73□□□□□ -0.37
LIG1-215ENST00000597901 REEP1Q9H902 201 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 VNN3Q9NY84 501 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 PRPF19Q9UMS4 504 aaKnown RBP12.73□□□□□ -0.37
LIG1-215ENST00000597901 U3KQV3 271 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 ISPDA4D126 451 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 AVPP01185 164 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 ACSM4P0C7M7 580 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 C1orf229Q6ZS94 237 aaPredicted RBP12.72□□□□□ -0.37
LIG1-215ENST00000597901 ZNF771Q7L3S4 317 aaPredicted RBP12.72□□□□□ -0.37
LIG1-215ENST00000597901 LRRC28Q86X40 367 aaPredicted RBP12.72□□□□□ -0.37
LIG1-215ENST00000597901 LNX2Q8N448 690 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 ZNF283Q8N7M2 679 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 SLC37A3Q8NCC5 494 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 OR2T4Q8NH00 348 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 MAP6Q96JE9 813 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 OR2V2Q96R30 315 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 THTPAQ9BU02 230 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 DGCR6LQ9BY27 220 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 WDR76Q9H967 626 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 PNRC2Q9NPJ4 139 aaKnown RBP12.72□□□□□ -0.37
LIG1-215ENST00000597901 UBAP1Q9NZ09 502 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 KCNG2Q9UJ96 466 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 PPP1R3CQ9UQK1 317 aa12.72□□□□□ -0.37
LIG1-215ENST00000597901 SAMHD1Q9Y3Z3 626 aaKnown RBP12.72□□□□□ -0.37
LIG1-215ENST00000597901 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.72□□□□□ -0.372e-6■■■■■ 32
LIG1-215ENST00000597901 TVP23AA6NH52 213 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 H0YL77 283 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 ACOT8O14734 319 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 TCF21O43680 179 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 PNPP00491 289 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 IGHV2-70P01814 119 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 LCATP04180 440 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 RAP2AP10114 183 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 TPTEP56180 551 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 TRAP1Q12931 704 aaKnown RBP12.71□□□□□ -0.37
LIG1-215ENST00000597901 PROKR2Q8NFJ6 384 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 OR51L1Q8NGJ5 315 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 OR4Q3Q8NH05 313 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 ASB9Q96DX5 294 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 LRGUKQ96M69 825 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 ATF6BQ99941 703 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 SLC30A2Q9BRI3 323 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 C19orf24Q9BVV8 132 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 CHID1Q9BWS9 393 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 HCAR1Q9BXC0 346 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 OCEL1Q9H607 264 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 GCM1Q9NP62 436 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 TBC1D23Q9NUY8 699 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 TMEM100Q9NV29 134 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 BAIAP2Q9UQB8 552 aa12.71□□□□□ -0.37
LIG1-215ENST00000597901 A0A0G2JMP0 313 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 A0A0X1KG70 313 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 IQCF6A8MYZ5 107 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 HAX1O00165 279 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 SELEP16581 610 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 RPS27P42677 84 aaKnown RBP12.7□□□□□ -0.38
LIG1-215ENST00000597901 SCGB2A2Q13296 93 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 GK2Q14410 553 aaPredicted RBP12.7□□□□□ -0.38
LIG1-215ENST00000597901 SHQ1Q6PI26 577 aaKnown RBP12.7□□□□□ -0.38
LIG1-215ENST00000597901 CD300LDQ6UXZ3 194 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 ZNF511Q8NB15 262 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 OR4M2Q8NGB6 313 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 OR10S1Q8NGN2 331 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 OR9Q1Q8NGQ5 310 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 ST7LQ8TDW4 575 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 SLCO4A1Q96BD0 722 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 SIGLEC11Q96RL6 698 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 RBM4Q9BWF3 364 aaKnown RBP12.7□□□□□ -0.38
LIG1-215ENST00000597901 TMPRSS13Q9BYE2 586 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 NMNAT2Q9BZQ4 307 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 FAM53CQ9NYF3 392 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 PCDHB10Q9UN67 800 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 MXRA5Q9NR99 2828 aa12.7□□□□□ -0.38
LIG1-215ENST00000597901 LOC105371242A0A075B767 164 aa12.69□□□□□ -0.38
LIG1-215ENST00000597901 TMEM178BH3BS89 294 aa12.69□□□□□ -0.38
LIG1-215ENST00000597901 J3QLI3 93 aa12.69□□□□□ -0.38
LIG1-215ENST00000597901 ZNF593O00488 134 aaPredicted RBP12.69□□□□□ -0.38
LIG1-215ENST00000597901 MLNRO43193 412 aa12.69□□□□□ -0.38
LIG1-215ENST00000597901 SOX14O95416 240 aa12.69□□□□□ -0.38
LIG1-215ENST00000597901 ZFP36P26651 326 aaKnown RBP12.69□□□□□ -0.38
LIG1-215ENST00000597901 FMO3P31513 532 aa12.69□□□□□ -0.38
LIG1-215ENST00000597901 SRP9P49458 86 aaKnown RBP12.69□□□□□ -0.38
LIG1-215ENST00000597901 SLC25A1P53007 311 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms