RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SLC25A1P53007 311 aa8.8□□□□□ -1
LIG3-216ENST00000593099 TPRA1Q86W33 373 aa8.8□□□□□ -1
LIG3-216ENST00000593099 TUSC5Q8IXB3 177 aa8.8□□□□□ -1
LIG3-216ENST00000593099 ZNF486Q96H40 463 aaPredicted RBP8.8□□□□□ -1
LIG3-216ENST00000593099 SLA2Q9H6Q3 261 aa8.8□□□□□ -1
LIG3-216ENST00000593099 ESRP2Q9H6T0 727 aaKnown RBP8.8□□□□□ -1
LIG3-216ENST00000593099 MTCL1Q9Y4B5 1905 aaKnown RBP8.8□□□□□ -1
LIG3-216ENST00000593099 GABRPO00591 440 aa8.79□□□□□ -1
LIG3-216ENST00000593099 BHLHE40O14503 412 aa8.79□□□□□ -1
LIG3-216ENST00000593099 RPS27P42677 84 aaKnown RBP8.79□□□□□ -1
LIG3-216ENST00000593099 ISL1P61371 349 aa8.79□□□□□ -1
LIG3-216ENST00000593099 EGR3Q06889 387 aa8.79□□□□□ -1
LIG3-216ENST00000593099 USP51Q70EK9 711 aa8.79□□□□□ -1
LIG3-216ENST00000593099 GMPPAQ96IJ6 420 aaPredicted RBP8.79□□□□□ -1
LIG3-216ENST00000593099 SLC22A4Q9H015 551 aa8.79□□□□□ -1
LIG3-216ENST00000593099 DPAGT1Q9H3H5 408 aa8.79□□□□□ -1
LIG3-216ENST00000593099 MEMO1Q9Y316 297 aa8.79□□□□□ -1
LIG3-216ENST00000593099 ZNF175Q9Y473 711 aa8.79□□□□□ -1
LIG3-216ENST00000593099 FADS1O60427 444 aa8.79□□□□□ -1
LIG3-216ENST00000593099 FAM87AP0C7U9 286 aa8.79□□□□□ -1
LIG3-216ENST00000593099 PRSS3P35030 304 aa8.79□□□□□ -1
LIG3-216ENST00000593099 ZFP36L2P47974 494 aaKnown RBP8.79□□□□□ -1
LIG3-216ENST00000593099 CDNFQ49AH0 187 aa8.79□□□□□ -1
LIG3-216ENST00000593099 RNASE10Q5GAN6 216 aaKnown RBP8.79□□□□□ -1
LIG3-216ENST00000593099 KRBOX4Q5JUW0 171 aa8.79□□□□□ -1
LIG3-216ENST00000593099 OR1J1Q8NGS3 322 aa8.79□□□□□ -1
LIG3-216ENST00000593099 OR1F12Q8NHA8 337 aa8.79□□□□□ -1
LIG3-216ENST00000593099 APOBEC3DQ96AK3 386 aaPredicted RBP8.79□□□□□ -1
LIG3-216ENST00000593099 FBXO17Q96EF6 278 aa8.79□□□□□ -1
LIG3-216ENST00000593099 IMMP1LQ96LU5 166 aa8.79□□□□□ -1
LIG3-216ENST00000593099 ICAM5Q9UMF0 924 aa8.79□□□□□ -1
LIG3-216ENST00000593099 TECTAO75443 2155 aa8.79□□□□□ -1
LIG3-216ENST00000593099 A0A1W2PQL4 384 aaPredicted RBP8.79□□□□□ -1
LIG3-216ENST00000593099 AQP7P3A6NL99 342 aa8.79□□□□□ -1
LIG3-216ENST00000593099 L7N2F9 121 aa8.79□□□□□ -1
LIG3-216ENST00000593099 SULT1C4O75897 302 aa8.79□□□□□ -1
LIG3-216ENST00000593099 LPLP06858 475 aa8.79□□□□□ -1
LIG3-216ENST00000593099 PIPP12273 146 aaPredicted RBP8.79□□□□□ -1
LIG3-216ENST00000593099 RAC2P15153 192 aa8.79□□□□□ -1
LIG3-216ENST00000593099 ACTBP60709 375 aa8.79□□□□□ -1
LIG3-216ENST00000593099 ACTG1P63261 375 aa8.79□□□□□ -1
LIG3-216ENST00000593099 DBPQ10586 325 aaPredicted RBP8.79□□□□□ -1
LIG3-216ENST00000593099 TMED4Q7Z7H5 227 aa8.79□□□□□ -1
LIG3-216ENST00000593099 C1orf87Q8N0U7 546 aa8.79□□□□□ -1
LIG3-216ENST00000593099 APCDD1LQ8NCL9 501 aa8.79□□□□□ -1
LIG3-216ENST00000593099 LILRB1Q8NHL6 650 aaPredicted RBP8.79□□□□□ -1
LIG3-216ENST00000593099 MCHR2Q969V1 340 aa8.79□□□□□ -1
LIG3-216ENST00000593099 ABHD17AQ96GS6 310 aa8.79□□□□□ -1
LIG3-216ENST00000593099 RBM14Q96PK6 669 aaKnown RBP8.79□□□□□ -1
LIG3-216ENST00000593099 PLA2G12AQ9BZM1 189 aa8.79□□□□□ -1
LIG3-216ENST00000593099 SLC5A7Q9GZV3 580 aa8.79□□□□□ -1
LIG3-216ENST00000593099 NOX4Q9NPH5 578 aa8.79□□□□□ -1
LIG3-216ENST00000593099 NLRC5Q86WI3 1866 aa8.79□□□□□ -1
LIG3-216ENST00000593099 CKAP5Q14008 2032 aa8.79□□□□□ -1
LIG3-216ENST00000593099 TICRRQ7Z2Z1 1910 aa8.79□□□□□ -1
LIG3-216ENST00000593099 TMEM129A0AVI4 362 aa8.78□□□□□ -1
LIG3-216ENST00000593099 NME2P1O60361 137 aa8.78□□□□□ -1
LIG3-216ENST00000593099 IL7P13232 177 aa8.78□□□□□ -1
LIG3-216ENST00000593099 NME2P22392 152 aa8.78□□□□□ -1
LIG3-216ENST00000593099 PMPCAQ10713 525 aa8.78□□□□□ -1
LIG3-216ENST00000593099 Q5PR19 223 aa8.78□□□□□ -1
LIG3-216ENST00000593099 PEAR1Q5VY43 1037 aaPredicted RBP8.78□□□□□ -1
LIG3-216ENST00000593099 SYS1Q8N2H4 156 aa8.78□□□□□ -1
LIG3-216ENST00000593099 PIGTQ969N2 578 aa8.78□□□□□ -1
LIG3-216ENST00000593099 TXNDC15Q96J42 360 aa8.78□□□□□ -1
LIG3-216ENST00000593099 MBOAT4Q96T53 435 aa8.78□□□□□ -1
LIG3-216ENST00000593099 USB1Q9BQ65 265 aaKnown RBP8.78□□□□□ -1
LIG3-216ENST00000593099 ABHD6Q9BV23 337 aa8.78□□□□□ -1
LIG3-216ENST00000593099 RCE1Q9Y256 329 aa8.78□□□□□ -1
LIG3-216ENST00000593099 RHBDD3Q9Y3P4 386 aa8.78□□□□□ -1
LIG3-216ENST00000593099 ZFC3H1O60293 1989 aaKnown RBP8.78□□□□□ -1
LIG3-216ENST00000593099 A0A0J9YW62 118 aa8.78□□□□□ -1
LIG3-216ENST00000593099 CAPNS1P04632 268 aa8.78□□□□□ -1
LIG3-216ENST00000593099 UMODP07911 640 aa8.78□□□□□ -1
LIG3-216ENST00000593099 ANXA3P12429 323 aa8.78□□□□□ -1
LIG3-216ENST00000593099 RAB7AP51149 207 aa8.78□□□□□ -1
LIG3-216ENST00000593099 SNRPD2P62316 118 aaKnown RBP8.78□□□□□ -1
LIG3-216ENST00000593099 NKX6-1P78426 367 aaPredicted RBP8.78□□□□□ -1
LIG3-216ENST00000593099 FMODQ06828 376 aa8.78□□□□□ -1
LIG3-216ENST00000593099 SLC17A1Q14916 467 aa8.78□□□□□ -1
LIG3-216ENST00000593099 RAB35Q15286 201 aa8.78□□□□□ -1
LIG3-216ENST00000593099 FJX1Q86VR8 437 aa8.78□□□□□ -1
LIG3-216ENST00000593099 SLC22A24Q8N4F4 322 aa8.78□□□□□ -1
LIG3-216ENST00000593099 ACBD4Q8NC06 268 aa8.78□□□□□ -1
LIG3-216ENST00000593099 FAM71CQ8NEG0 241 aa8.78□□□□□ -1
LIG3-216ENST00000593099 OR4D6Q8NGJ1 314 aa8.78□□□□□ -1
LIG3-216ENST00000593099 OR51E1Q8TCB6 317 aa8.78□□□□□ -1
LIG3-216ENST00000593099 ABHD5Q8WTS1 349 aa8.78□□□□□ -1
LIG3-216ENST00000593099 BEX2Q9BXY8 128 aa8.78□□□□□ -1
LIG3-216ENST00000593099 HES7Q9BYE0 225 aa8.78□□□□□ -1
LIG3-216ENST00000593099 OPA3Q9H6K4 179 aa8.78□□□□□ -1
LIG3-216ENST00000593099 TAS2R16Q9NYV7 291 aa8.78□□□□□ -1
LIG3-216ENST00000593099 TAS2R8Q9NYW2 309 aa8.78□□□□□ -1
LIG3-216ENST00000593099 NTMQ9P121 344 aa8.78□□□□□ -1
LIG3-216ENST00000593099 A0A0A6YYH2 397 aa8.78□□□□□ -1
LIG3-216ENST00000593099 LOC107986453A0A1B0GWG9 222 aa8.78□□□□□ -1
LIG3-216ENST00000593099 hCG_1809904A0A1W2PP81 198 aa8.78□□□□□ -1
LIG3-216ENST00000593099 A0A1W2PPE2 198 aa8.78□□□□□ -1
LIG3-216ENST00000593099 A0A1W2PR64 198 aa8.78□□□□□ -1
LIG3-216ENST00000593099 A0A1W2PRV1 198 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms