RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PLA2G12AQ9BZM1 189 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 OR51B6Q9H340 312 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 IL20RAQ9UHF4 553 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 LHFPL6Q9Y693 200 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 DOCK11Q5JSL3 2073 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 TANC2Q9HCD6 1990 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 A0A1B0GWJ7 208 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 DHRS12A0PJE2 317 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 OR6C68A6NDL8 312 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 LRRC30A6NM36 301 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 IQCF6A8MYZ5 107 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 RER1O15258 196 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 SPRY1O43609 319 aaPredicted RBP8.91□□□□□ -0.98
LIG3-212ENST00000590181 DNAJC8O75937 253 aaPredicted RBP8.91□□□□□ -0.98
LIG3-212ENST00000590181 UBOX5O94941 541 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 SCG5P05408 212 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 MSMBP08118 114 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 ANXA8P13928 327 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 ATP6V1B2P21281 511 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 GGT2P36268 569 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 MAGEB1P43366 347 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 LMO4P61968 165 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 TNFAIP6P98066 277 aaPredicted RBP8.91□□□□□ -0.98
LIG3-212ENST00000590181 MS4A2Q01362 244 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 TMEM155Q4W5P6 130 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 SLC18B1Q6NT16 456 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 DRAM2Q6UX65 266 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 RINLQ6ZS11 566 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 RFPL4BQ6ZWI9 263 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 C1orf87Q8N0U7 546 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 MUC20Q8N307 709 aaPredicted RBP8.91□□□□□ -0.98
LIG3-212ENST00000590181 KLHL36Q8N4N3 616 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 SPICQ8N5J4 248 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 SPERTQ8NA61 448 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 AQP11Q8NBQ7 271 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 PROKR2Q8NFJ6 384 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 CLDND2Q8NHS1 167 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 YIPF5Q969M3 257 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 TMEM186Q96B77 213 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 PITX2Q99697 317 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 RBM4Q9BWF3 364 aaKnown RBP8.91□□□□□ -0.98
LIG3-212ENST00000590181 TSSK6Q9BXA6 273 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 TOR3AQ9H497 397 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 CMC2Q9NRP2 79 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 DDX28Q9NUL7 540 aaKnown RBP8.91□□□□□ -0.98
LIG3-212ENST00000590181 TBC1D23Q9NUY8 699 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 DNAJB9Q9UBS3 223 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 ENOPH1Q9UHY7 261 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 STARD10Q9Y365 291 aa8.91□□□□□ -0.98
LIG3-212ENST00000590181 LRP5LA4QPB2 252 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 TCF21O43680 179 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 GMDSO60547 372 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 NCR1O76036 304 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 CFL1P23528 166 aaKnown RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 GRK5P34947 590 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 MPV17P39210 176 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 DDOSTP39656 456 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 ERVS71-1P61550 626 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 GRB2P62993 217 aaKnown RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 FLOT2Q14254 428 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 TSTQ16762 297 aaKnown RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 CR1LQ2VPA4 569 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 C11orf91Q3C1V1 193 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 SHQ1Q6PI26 577 aaKnown RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 C12orf54Q6X4T0 127 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 SHFQ7M4L6 423 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 RFLNBQ8N5W9 214 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 ZNF283Q8N7M2 679 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 PAPD5Q8NDF8 572 aaKnown RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 OR10G2Q8NGC3 310 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 TEX47Q8TBZ9 253 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 CCL17Q92583 94 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 FEVQ99581 238 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 OSBPL10Q9BXB5 764 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 NMNAT2Q9BZQ4 307 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 TMEM100Q9NV29 134 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 PPP1R3CQ9UQK1 317 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 POLR3KQ9Y2Y1 108 aaPredicted RBP8.9□□□□□ -0.98
LIG3-212ENST00000590181 NPTNQ9Y639 398 aa8.9□□□□□ -0.98
LIG3-212ENST00000590181 A0A0G2JMP0 313 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 A0A0X1KG70 313 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 TCRBV3S1A0A5B6 114 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 LYNX1G3V0Z9 82 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 DCTN6O00399 190 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 PRODHO43272 600 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 SPRY3O43610 288 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 DEAF1O75398 565 aaPredicted RBP8.89□□□□□ -0.99
LIG3-212ENST00000590181 FOXH1O75593 365 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 MPZL1O95297 269 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ACSM4P0C7M7 580 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 LYNX1P0DP58 116 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 CFPP27918 469 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 OTX1P32242 354 aaPredicted RBP8.89□□□□□ -0.99
LIG3-212ENST00000590181 GATA4P43694 442 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ENTPD1P49961 510 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 KCNJ8Q15842 424 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 CLEC12AQ5QGZ9 265 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ZNF362Q5T0B9 420 aaPredicted RBP8.89□□□□□ -0.99
LIG3-212ENST00000590181 SPATA46Q5T0L3 261 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms