RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FMO3P31513 532 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 GRK5P34947 590 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 RPS27P42677 84 aaKnown RBP20.29■□□□□ 0.84
SHMT1-206ENST00000579558 CDH15P55291 814 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 TNFAIP6P98066 277 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-206ENST00000579558 CDK5R2Q13319 367 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 HLXQ14774 488 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-206ENST00000579558 RSPO1Q2MKA7 263 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-206ENST00000579558 KRTAP27-1Q3LI81 207 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 HS3ST5Q8IZT8 346 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 MAP6Q96JE9 813 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 BEX2Q9BXY8 128 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 NMNAT2Q9BZQ4 307 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 SHARPINQ9H0F6 387 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 ZNF556Q9HAH1 456 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 CMC2Q9NRP2 79 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 LPAR3Q9UBY5 353 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 COMMD3-BMI1R4GMX3 469 aa20.29■□□□□ 0.84
SHMT1-206ENST00000579558 KIAA1324LA8MWY0 1029 aaPredicted RBP20.28■□□□□ 0.84
SHMT1-206ENST00000579558 ATP5HO75947 161 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 CD55P08174 381 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 ACSM4P0C7M7 580 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 CLUP10909 449 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 TNFSF4P23510 183 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 POU1F1P28069 291 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 MVKQ03426 396 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 AVPI1Q5T686 147 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 FBXW12Q6X9E4 464 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 Q6ZR03 302 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 SLCO4A1Q96BD0 722 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 C1orf159Q96HA4 380 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 WDR76Q9H967 626 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 TREM2Q9NZC2 230 aa20.28■□□□□ 0.84
SHMT1-206ENST00000579558 SPARCP09486 303 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 PRKACGP22612 351 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 COLCA1Q6ZS62 124 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 OR5AS1Q8N127 324 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 ZNF511Q8NB15 262 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 OR2Z1Q8NG97 314 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 OR6K6Q8NGW6 343 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 CCL17Q92583 94 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 C1QTNF5Q9BXJ0 243 aa20.27■□□□□ 0.84
SHMT1-206ENST00000579558 PSKH1P11801 424 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 ANXA8P13928 327 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 ENTPD1P49961 510 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 TPTEP56180 551 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 SPRNQ5BIV9 151 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 OR2T2Q6IF00 324 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 SLC27A4Q6P1M0 643 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 DCXRQ7Z4W1 244 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 OR10S1Q8NGN2 331 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 SPTSSAQ969W0 71 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 OTULINQ96BN8 352 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 TIMD4Q96H15 378 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 MED20Q9H944 212 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 WIPI2Q9Y4P8 454 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 TANC2Q9HCD6 1990 aa20.26■□□□□ 0.83
SHMT1-206ENST00000579558 FAM183AA6NL82 134 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 B4DSR2 109 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 M0R135 149 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 DEAF1O75398 565 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-206ENST00000579558 TIPRLO75663 272 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 LCATP04180 440 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 FAM157CP0CG43 387 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 OSMP13725 252 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 BLVRAP53004 296 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 SLC3A1Q07837 685 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 GINS1Q14691 196 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 FAM120AOSQ5T036 256 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 IL17RELQ6ZVW7 336 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 NAA40Q86UY6 237 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 ATG16L2Q8NAA4 619 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 RAB1CQ92928 201 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 ZNF799Q96GE5 643 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 HCAR1Q9BXC0 346 aa20.25■□□□□ 0.83
SHMT1-206ENST00000579558 DDX28Q9NUL7 540 aaKnown RBP20.25■□□□□ 0.83
SHMT1-206ENST00000579558 ZNF593O00488 134 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-206ENST00000579558 IFNA2P01563 188 aa20.24■□□□□ 0.83
SHMT1-206ENST00000579558 HNF1AP20823 631 aa20.24■□□□□ 0.83
SHMT1-206ENST00000579558 PAICSP22234 425 aaKnown RBP20.24■□□□□ 0.83
SHMT1-206ENST00000579558 LMO4P61968 165 aa20.24■□□□□ 0.83
SHMT1-206ENST00000579558 PCK2Q16822 640 aa20.24■□□□□ 0.83
SHMT1-206ENST00000579558 CR1LQ2VPA4 569 aa20.24■□□□□ 0.83
SHMT1-206ENST00000579558 ACSM5Q6NUN0 579 aa20.24■□□□□ 0.83
SHMT1-206ENST00000579558 SHQ1Q6PI26 577 aaKnown RBP20.24■□□□□ 0.83
SHMT1-206ENST00000579558 ZNF582Q96NG8 517 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-206ENST00000579558 FAM157AC9JC47 383 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 SURF4O15260 269 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 TNFRSF1AP19438 455 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 SLC6A9P48067 706 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 MALLQ13021 153 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 TEX30Q5JUR7 227 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 LINC01590Q5TEZ4 76 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 OR8G5Q8NG78 346 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 ITLN1Q8WWA0 313 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 SLAMF6Q96DU3 332 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 COPS4Q9BT78 406 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 MMADHCQ9H3L0 296 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-206ENST00000579558 NTN4Q9HB63 628 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 KIF17Q9P2E2 1029 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms