RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 OR13C8Q8NGS7 320 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 TNFSF18Q9UNG2 199 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 LHX6Q9UPM6 363 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 CPED1A4D0V7 1026 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 OR6C76A6NM76 312 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 WDPCPO95876 746 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 PDZK1IP1Q13113 114 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 PRTGQ2VWP7 1150 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 FAM76BQ5HYJ3 339 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 WBP1Q96G27 269 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 OR6C65A6NJZ3 312 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 RHPN2P1A8MT19 583 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 M0R036 132 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 ABCD4O14678 606 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 NFYBP25208 207 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 CRABP1P29762 137 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 ZNF704Q6ZNC4 412 aaPredicted RBP12.98□□□□□ -0.33
VPS35-210ENST00000568784 OR51E1Q8TCB6 317 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 FOXQ1Q9C009 403 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 A0A1W2PPC1 479 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 ABOP16442 354 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 RABIFP47224 123 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 FLI1Q01543 452 aaPredicted RBP12.98□□□□□ -0.33
VPS35-210ENST00000568784 TMEM244Q5VVB8 128 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 SLC22A18ASQ8N1D0 253 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 RNF166Q96A37 237 aaPredicted RBP12.98□□□□□ -0.33
VPS35-210ENST00000568784 NICN1Q9BSH3 213 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 CRB3Q9BUF7 120 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 PCOLCE2Q9UKZ9 415 aa12.98□□□□□ -0.33
VPS35-210ENST00000568784 PHF3Q92576 2039 aaKnown RBP12.98□□□□□ -0.33
VPS35-210ENST00000568784 TMEM218A2RU14 115 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 A6NCN8 305 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 MED6O75586 246 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 PPICP45877 212 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 HSD17B7P56937 341 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 OR2I1PQ8NGU4 316 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 OR2AJ1Q8NGZ0 328 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 C20orf24Q9BUV8 137 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 GDF2Q9UK05 429 aaPredicted RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 ZNF175Q9Y473 711 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 IGHV5-51A0A0C4DH38 117 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 A0A1W2PP11 408 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 TNFRSF10CO14798 259 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 NSA2O95478 260 aaKnown RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 S100A9P06702 114 aaKnown RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 MYF5P13349 255 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 ZNF93P35789 620 aaPredicted RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 CSNK2A1P68400 391 aaPredicted RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 ZNF616Q08AN1 781 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 EMC4Q5J8M3 183 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 DNM1P34Q6PK57 102 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 GLIPR1L1Q6UWM5 242 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 BAP18Q8IXM2 172 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 ZNF283Q8N7M2 679 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 CSNK2A3Q8NEV1 391 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 NUBPLQ8TB37 319 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 ARL5BQ96KC2 179 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 LSM5Q9Y4Y9 91 aaKnown RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 SLCO1B1Q9Y6L6 691 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 TEX13DA0A0J9YY54 714 aaPredicted RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 TNFRSF4P43489 277 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 KCNJ3P48549 501 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 SRSF3P84103 164 aaKnown RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 INPP5JQ15735 1006 aaPredicted RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 GPX7Q96SL4 187 aaPredicted RBP12.97□□□□□ -0.33
VPS35-210ENST00000568784 KLRF1Q9NZS2 232 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 SULT1C2O00338 296 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 IL33O95760 270 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 CD80P33681 288 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 SLC6A8P48029 635 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 PPT1P50897 306 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 BLKP51451 505 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 BIDP55957 195 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 KRBOX4Q5JUW0 171 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 RAB11FIP2Q7L804 512 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 LDLRAD3Q86YD5 345 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 LINC00518Q8N0U6 118 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 OR5H2Q8NGV7 314 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 TXNIPQ9H3M7 391 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 CUTCQ9NTM9 273 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 RHBDD3Q9Y3P4 386 aa12.97□□□□□ -0.33
VPS35-210ENST00000568784 MED19A0JLT2 244 aaPredicted RBP12.96□□□□□ -0.33
VPS35-210ENST00000568784 RNF222A6NCQ9 220 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 PRR19A6NJB7 356 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 SIGLEC6O43699 453 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 GLAP06280 429 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 SFTPDP35247 375 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 FUT7Q11130 342 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 ISXQ2M1V0 245 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 PEG10Q86TG7 708 aaKnown RBP12.96□□□□□ -0.33
VPS35-210ENST00000568784 LRRC75AQ8NAA5 344 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 SLC46A1Q96NT5 459 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 TLNRD1Q9H1K6 362 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 SCPEP1Q9HB40 452 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 PRMT8Q9NR22 394 aaPredicted RBP12.96□□□□□ -0.33
VPS35-210ENST00000568784 R4GMQ9 66 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 ABCA7Q8IZY2 2146 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 CHD9Q3L8U1 2897 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 PRH1P02810 166 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 GUCA1AP43080 201 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms