RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RGS7BPQ6MZT1 257 aaPredicted RBP11.85□□□□□ -0.51
CLN3-235ENST00000568497 ZDHHC13Q8IUH4 622 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 OR2T4Q8NH00 348 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 ZFAND2BQ8WV99 257 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 IPCEF1Q8WWN9 437 aaPredicted RBP11.85□□□□□ -0.51
CLN3-235ENST00000568497 C4orf45Q96LM5 186 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 IL4I1Q96RQ9 567 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 SLC29A1Q99808 456 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 PIMREGQ9BSJ6 248 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 CDADC1Q9BWV3 514 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 ZNF442Q9H7R0 627 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 DYNLRB1Q9NP97 96 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 PTTG3PQ9NZH4 202 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 KCNG2Q9UJ96 466 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 IGHV3-64DA0A0J9YX35 117 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 CCDC182A6NF36 153 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 OR6C6A6NF89 314 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 PSMD9O00233 223 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 ZNF593O00488 134 aaPredicted RBP11.84□□□□□ -0.51
CLN3-235ENST00000568497 NCR1O76036 304 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 ABHD16AO95870 558 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 IFNGP01579 166 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 ZNF823P16415 610 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 MAGEB1P43366 347 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 ARHGDIAP52565 204 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 SLC25A1P53007 311 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 PCBD1P61457 104 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 PPP1CBP62140 327 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 LSM6P62312 80 aaKnown RBP11.84□□□□□ -0.51
CLN3-235ENST00000568497 ZSCAN26Q16670 478 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 ELFN2Q5R3F8 820 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 C1QTNF12Q5T7M4 302 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 HIST2H2BDQ6DRA6 164 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 DCXRQ7Z4W1 244 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 OR5AS1Q8N127 324 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 CBR4Q8N4T8 237 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 TCEANCQ8N8B7 351 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 IL17RDQ8NFM7 739 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 OR6N2Q8NGY6 317 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 NRBF2Q96F24 287 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 RAB3IPQ96QF0 476 aaPredicted RBP11.84□□□□□ -0.51
CLN3-235ENST00000568497 SNX18Q96RF0 628 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 GABARAPL1Q9H0R8 117 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 SLC25A19Q9HC21 320 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 CENPMQ9NSP4 180 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 CYB5R1Q9UHQ9 305 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 BAIAP2Q9UQB8 552 aa11.84□□□□□ -0.51
CLN3-235ENST00000568497 PRR32B1ATL7 298 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 B9A039 149 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 PRR23D1E9PI22 279 aaPredicted RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 MAGEB4O15481 346 aaPredicted RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 SPRY3O43610 288 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 LILRA1O75019 489 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 RGS9O75916 674 aaPredicted RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 HPXP02790 462 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 PRR23D2P0DMB1 279 aaPredicted RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 FCGR1AP12314 374 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 GSTT1P30711 240 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 PRKXP51817 358 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 RPS7P62081 194 aaKnown RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 HIST1H3AP68431 136 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 APOFQ13790 326 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 EFNB3Q15768 340 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 TSTQ16762 297 aaKnown RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 PRR31Q5SQ13 230 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 HIST2H3PS2Q5TEC6 136 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 HIST2H3AQ71DI3 136 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 ZNF771Q7L3S4 317 aaPredicted RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 SHFQ7M4L6 423 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 ALDH16A1Q8IZ83 802 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 OR1J2Q8NGS2 313 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 SYNPRQ8TBG9 265 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 MARS2Q96GW9 593 aaKnown RBP11.83□□□□□ -0.52
CLN3-235ENST00000568497 OSBPL10Q9BXB5 764 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 METRNQ9UJH8 293 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 CACNG2Q9Y698 323 aa11.83□□□□□ -0.52
CLN3-235ENST00000568497 ZAR1LA6NP61 321 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 VWC2LB2RUY7 222 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 H7C417 338 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 SNAP29O95721 258 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 FMO3P31513 532 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 NR4A2P43354 598 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 ENTPD1P49961 510 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 PDLIM4P50479 330 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 EFNA4P52798 201 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 EIF2B1Q14232 305 aaKnown RBP11.82□□□□□ -0.52
CLN3-235ENST00000568497 GK3PQ14409 553 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 NKPD1Q17RQ9 610 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 LRRC36Q1X8D7 754 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 SNAI3Q3KNW1 292 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 SLX4IPQ5VYV7 408 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 LPCAT4Q643R3 524 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 DPY19L4Q7Z388 723 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 DPPA2Q7Z7J5 298 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 OR2AJ1Q8NGZ0 328 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 KLF14Q8TD94 323 aaPredicted RBP11.82□□□□□ -0.52
CLN3-235ENST00000568497 PLEKHA8Q96JA3 519 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 MBOAT4Q96T53 435 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 MSL2Q9HCI7 577 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 BRD7Q9NPI1 651 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms