RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	SDR39U1	Q9NRG7	319 aa	Predicted RBP	13.28	□□□□□ -0.28
CLK3-223	ENST00000568488	SLAMF8	Q9P0V8	285 aa		13.28	□□□□□ -0.28
CLK3-223	ENST00000568488	RNF7	Q9UBF6	113 aa		13.28	□□□□□ -0.28
CLK3-223	ENST00000568488	KPTN	Q9Y664	436 aa		13.28	□□□□□ -0.28
CLK3-223	ENST00000568488		M0QX08	132 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	LGALS8	O00214	317 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	PPP1R3D	O95685	299 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	ECD	O95905	644 aa	Predicted RBP	13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	GYPA	P02724	150 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	DBH	P09172	617 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	CD33	P20138	364 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	PPIB	P23284	216 aa	Known RBP	13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	RPL27	P61353	136 aa	Known RBP	13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	MPPED2	Q15777	294 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	ALG10	Q5BKT4	473 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	INTS11	Q5TA45	600 aa	Known RBP	13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	PGBD2	Q6P3X8	592 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	CALHM3	Q86XJ0	350 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	GPR32P1	Q8NGA4	272 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488		Q8TCH9	128 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	ST8SIA4	Q92187	359 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	ERGIC1	Q969X5	290 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	ECSIT	Q9BQ95	431 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	OCSTAMP	Q9BR26	566 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	WAC	Q9BTA9	647 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	C20orf141	Q9NUB4	165 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	DYNC2H1	Q8NCM8	4307 aa	Known RBP	13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	RYR2	Q92736	4967 aa		13.27	□□□□□ -0.29
CLK3-223	ENST00000568488	MEIOC	A2RUB1	952 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	NPIPB13	A6NJU9	1138 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	IQCF6	A8MYZ5	107 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	NPIPB4	C9JG80	1138 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488		H3BUX3	64 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	FBP2	O00757	339 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	DVL1	O14640	695 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	NPFF	O15130	113 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	FBXO24	O75426	580 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	CD28	P10747	220 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	CD247	P20963	164 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	DLX1	P56177	255 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	PRSS12	P56730	875 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	POU4F2	Q12837	409 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	OTP	Q5XKR4	325 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	AEN	Q8WTP8	325 aa	Known RBP	13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	ZNF583	Q96ND8	569 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	PAIP2	Q9BPZ3	127 aa	Known RBP	13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	CENPH	Q9H3R5	247 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	FN3KRP	Q9HA64	309 aa		13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	RPUSD1	Q9UJJ7	312 aa	Known RBP	13.26	□□□□□ -0.29
CLK3-223	ENST00000568488	TRAV38-1	A0A0B4J264	116 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	EVPLL	A8MZ36	301 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	UBD	O15205	165 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	NDUFA2	O43678	99 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	MSX2	P35548	267 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	RGS6	P49758	472 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	CTXN1	P60606	82 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	GUCA2A	Q02747	115 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	BEND6	Q5SZJ8	279 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	LRIF1	Q5T3J3	769 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	NKAIN4	Q8IVV8	208 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	PNKD	Q8N490	385 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	EIF1AD	Q8N9N8	165 aa	Known RBP	13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	OR1F12	Q8NHA8	337 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	TMEM255B	Q8WV15	326 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	CPPED1	Q9BRF8	314 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	HCAR1	Q9BXC0	346 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	ROPN1B	Q9BZX4	212 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	IKZF5	Q9H5V7	419 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	ROPN1	Q9HAT0	212 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	VAPA	Q9P0L0	249 aa		13.25	□□□□□ -0.29
CLK3-223	ENST00000568488	OOEP	A6NGQ2	149 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488		H7C1C5	153 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	FCN3	O75636	299 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	SAA4	P35542	130 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	CD200	P41217	278 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	LCN6	P62502	163 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	KLRD1	Q13241	179 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	NDUFA11	Q86Y39	141 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	CMTM4	Q8IZR5	234 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	FGFRL1	Q8N441	504 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	CELF2-AS1	Q8N7Q2	184 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	APOBEC3D	Q96AK3	386 aa	Predicted RBP	13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	SSX3	Q99909	188 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	TRIM36	Q9NQ86	728 aa		13.24	□□□□□ -0.29
CLK3-223	ENST00000568488	OR6C6	A6NF89	314 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488		J3QW42	95 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	TSPAN19	P0C672	248 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	RAD23A	P54725	363 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	CCDC92	Q53HC0	331 aa	Predicted RBP	13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	PAGE3	Q5JUK9	113 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	METAP1D	Q6UB28	335 aa	Predicted RBP	13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	SLC26A7	Q8TE54	656 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	TMEM239	Q8WW34	195 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	OR52B2	Q96RD2	323 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	NKX3-1	Q99801	234 aa	Predicted RBP	13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	CITED2	Q99967	270 aa	Predicted RBP	13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	CORO2B	Q9UQ03	480 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	MAB21L2	Q9Y586	359 aa		13.23	□□□□□ -0.29
CLK3-223	ENST00000568488	IGHV3OR15-7	A0A075B7D8	119 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms