RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ATP5J2P56134 94 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 PRSS12P56730 875 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 HLXQ14774 488 aaPredicted RBP16.74■□□□□ 0.27
CLN3-225ENST00000566824 COLCA1Q6ZS62 124 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 GID4Q8IVV7 300 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 SORCS2Q96PQ0 1159 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 DCLRE1CQ96SD1 692 aaKnown RBP16.74■□□□□ 0.27
CLN3-225ENST00000566824 COPS4Q9BT78 406 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 C1QTNF5Q9BXJ0 243 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 YIPF3Q9GZM5 350 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 ELOVL3Q9HB03 270 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 PTTG3PQ9NZH4 202 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 SLC22A31A6NKX4 558 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 ZNF878C9JN71 531 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 H7C417 338 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 M0R135 149 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 PSMD9O00233 223 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 MAGEB4O15481 346 aaPredicted RBP16.73■□□□□ 0.27
CLN3-225ENST00000566824 LYNP07948 512 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 ADRA2AP08913 450 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 SLC2A1P11166 492 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 SNRPD2P62316 118 aaKnown RBP16.73■□□□□ 0.27
CLN3-225ENST00000566824 ADARB1P78563 741 aaKnown RBP16.73■□□□□ 0.27
CLN3-225ENST00000566824 SNAI3Q3KNW1 292 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 OR51G2Q8NGK0 314 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 RHOXF1Q8NHV9 184 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 TRUB1Q8WWH5 349 aaKnown RBP16.73■□□□□ 0.27
CLN3-225ENST00000566824 CYGBQ8WWM9 190 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 ZNF799Q96GE5 643 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 RDH12Q96NR8 316 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 CNN2Q99439 309 aaKnown RBP16.73■□□□□ 0.27
CLN3-225ENST00000566824 SLCO1C1Q9NYB5 712 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 TAAR3PQ9P1P4 343 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 HIVEP1P15822 2718 aa16.73■□□□□ 0.27
CLN3-225ENST00000566824 FLNAP21333 2647 aaKnown RBP16.73■□□□□ 0.27
CLN3-225ENST00000566824 VSTM5A8MXK1 200 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 H0YHG0 523 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 SBK2P0C263 348 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 EVX1P49640 407 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 TPTEP56180 551 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 KLF3P57682 345 aaPredicted RBP16.72■□□□□ 0.27
CLN3-225ENST00000566824 PSG7Q13046 419 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 OCLNQ16625 522 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 ZNF718Q3SXZ3 478 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 SLC25A30Q5SVS4 291 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 MBNL2Q5VZF2 373 aaKnown RBP16.72■□□□□ 0.27
CLN3-225ENST00000566824 ARL9Q6T311 187 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 LRRN1Q6UXK5 716 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 SLC35F2Q8IXU6 374 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 LRRC75A-AS1Q8N1F1 130 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 ZNF454Q8N9F8 522 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 WFDC11Q8NEX6 87 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 APH1BQ8WW43 257 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 KCNJ15Q99712 375 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 VRK1Q99986 396 aaPredicted RBP16.72■□□□□ 0.27
CLN3-225ENST00000566824 TPK1Q9H3S4 243 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 HAO2Q9NYQ3 351 aa16.72■□□□□ 0.27
CLN3-225ENST00000566824 WARS2Q9UGM6 360 aaKnown RBP16.72■□□□□ 0.27
CLN3-225ENST00000566824 A0A1W2PPW3 197 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 IGHV3-13P01766 116 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 LCATP04180 440 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 NAT2P11245 290 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 PPOXP50336 477 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 NUDT6P53370 316 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 TAF13Q15543 124 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 Q5PR19 223 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 SSX6Q7RTT6 188 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 ZNF555Q8NEP9 628 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 SPTSSAQ969W0 71 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 APOBEC3DQ96AK3 386 aaPredicted RBP16.71■□□□□ 0.27
CLN3-225ENST00000566824 CMBLQ96DG6 245 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 TBX5Q99593 518 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 C8orf4Q9NR00 106 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 LAMP5Q9UJQ1 280 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 N6AMT1Q9Y5N5 214 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 PMF1-BGLAPU3KQ54 211 aa16.71■□□□□ 0.27
CLN3-225ENST00000566824 ACANP16112 2415 aa16.71■□□□□ 0.26
CLN3-225ENST00000566824 WBP4O75554 376 aaKnown RBP16.7■□□□□ 0.26
CLN3-225ENST00000566824 GNAO1P09471 354 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 H2BFMP0C1H6 154 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 GCH1P30793 250 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 SLC6A9P48067 706 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 CX3CR1P49238 355 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 RGS6P49758 472 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 SMN1Q16637 294 aaKnown RBP16.7■□□□□ 0.26
CLN3-225ENST00000566824 ZNF691Q5VV52 312 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 PRSS45Q7RTY3 260 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 ZNF283Q8N7M2 679 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 OR2AE1Q8NHA4 323 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 TRMT61AQ96FX7 289 aaKnown RBP16.7■□□□□ 0.26
CLN3-225ENST00000566824 DYNLRB1Q9NP97 96 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 ZNF319Q9P2F9 582 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 LRP12Q9Y561 859 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 ATP6V1G2O95670 118 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 MMP15P51511 669 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 DRAM2Q6UX65 266 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 DHRSXQ8N5I4 330 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 APOL4Q9BPW4 351 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 ADI1Q9BV57 179 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 AMBNQ9NP70 447 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms