RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SLC26A10Q8NG04 563 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 MEGF10Q96KG7 1140 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 C1orf147Q96MC9 270 aaPredicted RBP15.94■□□□□ 0.14
VPS35-202ENST00000561713 COQ7Q99807 217 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 HDHD2Q9H0R4 259 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 UNKLQ9H9P5 680 aaKnown RBP15.94■□□□□ 0.14
VPS35-202ENST00000561713 PATZ1Q9HBE1 687 aaKnown RBP15.94■□□□□ 0.14
VPS35-202ENST00000561713 GCM1Q9NP62 436 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 IL19Q9UHD0 177 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 MAGEL2Q9UJ55 1249 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 B9D1Q9UPM9 204 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 CEACAM18A8MTB9 384 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 F5H0A9 414 aaPredicted RBP15.93■□□□□ 0.14
VPS35-202ENST00000561713 F5H5P2 479 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 SNX3O60493 162 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 ANOS1P23352 680 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 FPR3P25089 353 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 CRABP1P29762 137 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 RRM2P31350 389 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 HIST1H3AP68431 136 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 HOXA4Q00056 320 aaPredicted RBP15.93■□□□□ 0.14
VPS35-202ENST00000561713 COX10Q12887 443 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 TMEM155Q4W5P6 130 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 ARMCX4Q5H9R4 360 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 CLEC12AQ5QGZ9 265 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 FAM201AQ5SY85 155 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 SLC35F1Q5T1Q4 408 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 HIST2H3PS2Q5TEC6 136 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 FBXW12Q6X9E4 464 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 HIST2H3AQ71DI3 136 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 DOK3Q7L591 496 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 MOGAT3Q86VF5 341 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 BCL6BQ8N143 479 aaPredicted RBP15.93■□□□□ 0.14
VPS35-202ENST00000561713 TAF15Q92804 592 aaKnown RBP eCLIP15.93■□□□□ 0.14
VPS35-202ENST00000561713 PTP4A1Q93096 173 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 APOBEC3DQ96AK3 386 aaPredicted RBP15.93■□□□□ 0.14
VPS35-202ENST00000561713 PYURFQ96I23 114 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 NSMCE2Q96MF7 247 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 ARL8BQ9NVJ2 186 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 ZNF69Q9UC07 566 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 ATPIF1Q9UII2 106 aa15.93■□□□□ 0.14
VPS35-202ENST00000561713 IGHV3OR16-10A0A075B7F0 116 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 OR6C68A6NDL8 312 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 TMEM178BH3BS89 294 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 RENP00797 406 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 HLA-DPB1P04440 258 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 PSKH1P11801 424 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 PYCR1P32322 319 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 MDH2P40926 338 aaKnown RBP15.92■□□□□ 0.14
VPS35-202ENST00000561713 RPS27P42677 84 aaKnown RBP15.92■□□□□ 0.14
VPS35-202ENST00000561713 RGS6P49758 472 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 GYS2P54840 703 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 RSPO1Q2MKA7 263 aaPredicted RBP15.92■□□□□ 0.14
VPS35-202ENST00000561713 RFX4Q33E94 735 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 SLC18B1Q6NT16 456 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 LYPD4Q6UWN0 246 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 ZNF620Q6ZNG0 422 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 LRRC28Q86X40 367 aaPredicted RBP15.92■□□□□ 0.14
VPS35-202ENST00000561713 GJC3Q8NFK1 279 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 OR8G5Q8NG78 346 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 OR9Q2Q8NGE9 314 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 COG8Q96MW5 612 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 EGLN3Q9H6Z9 239 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 GORASP2Q9H8Y8 452 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 NUP50Q9UKX7 468 aa15.92■□□□□ 0.14
VPS35-202ENST00000561713 PPIAL4EA0A075B759 164 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 PPIAL4CA0A0B4J2A2 164 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 PPIAL4DF5H284 164 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 F5H5K5 113 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 SURF4O15260 269 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 HLA-DQA2P01906 255 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 FABP3P05413 133 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 PPIAL4FP0DN26 164 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 HSD17B1P14061 328 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 ZNF12P17014 697 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 NOS3P29474 1203 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 SLC6A9P48067 706 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 ZNF154Q13106 437 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 BAMBIQ13145 260 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 ESCO2Q56NI9 601 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 KLF17Q5JT82 389 aaPredicted RBP15.91■□□□□ 0.14
VPS35-202ENST00000561713 PGM2L1Q6PCE3 622 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 PGAM4Q8N0Y7 254 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 CYB561A3Q8NBI2 242 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 C19orf18Q8NEA5 215 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 ZNF48Q96MX3 618 aaPredicted RBP15.91■□□□□ 0.14
VPS35-202ENST00000561713 PITX2Q99697 317 aa15.91■□□□□ 0.14
VPS35-202ENST00000561713 NSRP1Q9H0G5 558 aaKnown RBP15.91■□□□□ 0.14
VPS35-202ENST00000561713 MRPL22Q9NWU5 206 aaKnown RBP15.91■□□□□ 0.14
VPS35-202ENST00000561713 A8MXK9 166 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 IQCF6A8MYZ5 107 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 J3QW42 95 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 ACSM4P0C7M7 580 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 RPS2P15880 293 aaKnown RBP15.9■□□□□ 0.14
VPS35-202ENST00000561713 ATP6V1B2P21281 511 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 TUBG1P23258 451 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 GSSP48637 474 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.9■□□□□ 0.14
VPS35-202ENST00000561713 MIDNQ504T8 468 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 SAMD4BQ5PRF9 694 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms