RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CYP2R1Q6VVX0 501 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 FBXW12Q6X9E4 464 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 CFAP77Q6ZQR2 320 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 ZDHHC21Q8IVQ6 265 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 DEFB107AQ8IZN7 70 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 BPIFB2Q8N4F0 458 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 SPICQ8N5J4 248 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 OR8G5Q8NG78 346 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 OR2AJ1Q8NGZ0 328 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 OR13G1Q8NGZ3 307 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 MEGF10Q96KG7 1140 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 SIGLEC11Q96RL6 698 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 COQ7Q99807 217 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 HDHD2Q9H0R4 259 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 EGLN3Q9H6Z9 239 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 GCM1Q9NP62 436 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 IL1RAPQ9NPH3 570 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 ARL2BPQ9Y2Y0 163 aa8.6□□□□□ -1.03
LDLR-214ENST00000560628 TRIM77I1YAP6 450 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 MLNRO43193 412 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 IDH3BO43837 385 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 LCATP04180 440 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 HLA-DPB1P04440 258 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 ACSM4P0C7M7 580 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 SELEP16581 610 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 FPR2P25090 351 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 GGT2P36268 569 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 PMELP40967 661 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 MMP16P51512 607 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 HILS1P60008 231 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.59□□□□□ -1.03
LDLR-214ENST00000560628 PPP1R8Q12972 351 aaKnown RBP8.59□□□□□ -1.03
LDLR-214ENST00000560628 TSPAN31Q12999 210 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 SLC36A3Q495N2 470 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 FAM201AQ5SY85 155 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 PGBD2Q6P3X8 592 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 C16orf89Q6UX73 402 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 COLCA1Q6ZS62 124 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 USP43Q70EL4 1123 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 PIGWQ7Z7B1 504 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 ZBTB46Q86UZ6 589 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 MOGAT3Q86VF5 341 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 CYB561A3Q8NBI2 242 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 DEFB108BQ8NET1 73 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 OR9Q2Q8NGE9 314 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 ZFAND2BQ8WV99 257 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 GCDHQ92947 438 aaPredicted RBP8.59□□□□□ -1.03
LDLR-214ENST00000560628 SLC30A2Q9BRI3 323 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 SUCNR1Q9BXA5 334 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 HCAR1Q9BXC0 346 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 TMEM165Q9HC07 324 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 ESM1Q9NQ30 184 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 TMEM100Q9NV29 134 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 MRPL22Q9NWU5 206 aaKnown RBP8.59□□□□□ -1.03
LDLR-214ENST00000560628 CYB5R1Q9UHQ9 305 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 ATPIF1Q9UII2 106 aa8.59□□□□□ -1.03
LDLR-214ENST00000560628 PPIAL4EA0A075B759 164 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 PPIAL4CA0A0B4J2A2 164 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 TVP23AA6NH52 213 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 CEACAM18A8MTB9 384 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 IQCF6A8MYZ5 107 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 F5H0A9 414 aaPredicted RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 PPIAL4DF5H284 164 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 J3QW42 95 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 TNFRSF11BO00300 401 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 FSHBP01225 129 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 GASTP01350 101 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 WNT2P09544 360 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 PPIAL4FP0DN26 164 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 ZNF823P16415 610 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 CFPP27918 469 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 MDH2P40926 338 aaKnown RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 RPS27P42677 84 aaKnown RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 SRP9P49458 86 aaKnown RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 TRAP1Q12931 704 aaKnown RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 ZNF154Q13106 437 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 KRTAP27-1Q3LI81 207 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 ESCO2Q56NI9 601 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 LYPD4Q6UWN0 246 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 ZNF620Q6ZNG0 422 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 BCL6BQ8N143 479 aaPredicted RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 ZDHHC22Q8N966 263 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 OR51L1Q8NGJ5 315 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 FAM216AQ8WUB2 273 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 ZNRF4Q8WWF5 429 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 DVL3Q92997 716 aaPredicted RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 SLCO4A1Q96BD0 722 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 MAP6Q96JE9 813 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 JMJD8Q96S16 334 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 ATF6BQ99941 703 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 C1QTNF5Q9BXJ0 243 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 PNRC2Q9NPJ4 139 aaKnown RBP8.58□□□□□ -1.04
LDLR-214ENST00000560628 PPIAL4AQ9Y536 164 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 INSIG2Q9Y5U4 225 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 AUP1Q9Y679 476 aa8.58□□□□□ -1.04
LDLR-214ENST00000560628 IGHV3OR16-10A0A075B7F0 116 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 TMEM89A2RUT3 159 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 C5orf63A6NC05 138 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 B2RBV5 119 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 IFNL4K9M1U5 179 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms