RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CSN2P05814 226 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 MMP16P51512 607 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 PRSS12P56730 875 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 AP3S2P59780 193 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 GABREP78334 506 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 OC90Q02509 493 aaPredicted RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 TRA2AQ13595 282 aaKnown RBP eCLIP9.41□□□□□ -0.9
CUX1-217ENST00000558836 CLPPQ16740 277 aaPredicted RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 ZNF782Q6ZMW2 699 aaPredicted RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 ZNF704Q6ZNC4 412 aaPredicted RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 PPP1R32Q7Z5V6 425 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 OR51S1Q8NGJ8 323 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 OR2M2Q96R28 347 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 MRI1Q9BV20 369 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 ZNF416Q9BWM5 594 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 RBM24Q9BX46 236 aaKnown RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 METTL17Q9H7H0 456 aaPredicted RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 ZFP64Q9NPA5 681 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 ZNF275Q9NSD4 429 aaPredicted RBP9.41□□□□□ -0.9
CUX1-217ENST00000558836 ZNF69Q9UC07 566 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 SLC5A6Q9Y289 635 aa9.41□□□□□ -0.9
CUX1-217ENST00000558836 A0A0J9YW62 118 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 H7C417 338 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 TRAPPC6AO75865 159 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 SSTR2P30874 369 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 PRSS3P35030 304 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 ZNF121P58317 390 aaPredicted RBP9.4□□□□□ -0.9
CUX1-217ENST00000558836 MLF1P58340 268 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 SLC35A1P78382 337 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 FAM57BQ71RH2 274 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 RAB11FIP2Q7L804 512 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 GTPBP8Q8N3Z3 284 aaPredicted RBP9.4□□□□□ -0.9
CUX1-217ENST00000558836 DTWD2Q8NBA8 298 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 OR6X1Q8NH79 312 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 PAQR8Q8TEZ7 354 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 ANGPTL4Q9BY76 406 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 STMN3Q9NZ72 180 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 MTFP1Q9UDX5 166 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 HDGFL3Q9Y3E1 203 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 ARID1AO14497 2285 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 TMEM235A6NFC5 223 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 NPIPB13A6NJU9 1138 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 NPIPB4C9JG80 1138 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 F5H5K5 113 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 M0QYG6 137 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 ACHEP22303 614 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 MNDAP41218 407 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 TMEM244Q5VVB8 128 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 ELMOD2Q8IZ81 293 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 OR4S1Q8NGB4 309 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 M1APQ8TC57 530 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 CT55Q8WUE5 264 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 ZBTB8AQ96BR9 441 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 C7orf50Q9BRJ6 194 aaKnown RBP9.4□□□□□ -0.9
CUX1-217ENST00000558836 GINS4Q9BRT9 223 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 SRXN1Q9BYN0 137 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 CA10Q9NS85 328 aa9.4□□□□□ -0.9
CUX1-217ENST00000558836 SMAD9O15198 467 aaKnown RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 ISG15P05161 165 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 JMJD7P0C870 316 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ANXA3P12429 323 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SLC22A6Q4U2R8 563 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SPINK14Q6IE38 97 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SLC25A47Q6Q0C1 308 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ESX1Q8N693 406 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 OR8B12Q8NGG6 310 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ZNF431Q8TF32 576 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 NPRL2Q8WTW4 380 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 CHST6Q9GZX3 395 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 FANCFQ9NPI8 374 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 GPR84Q9NQS5 396 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 GLTPQ9NZD2 209 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SLC23A1Q9UHI7 598 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 FARSAQ9Y285 508 aaKnown RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 R4GN57 208 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SPTBN2O15020 2390 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 LOC100509620A0A075B734 347 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 OR5H15A6NDH6 313 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 NPIPA2E9PIF3 369 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 NPIPA3F8WFD2 350 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ZNF780AO75290 641 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 UBCP0CG48 685 aaKnown RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 ADH6P28332 368 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 NTF4P34130 210 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SLC6A9P48067 706 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 DSCR4P56555 118 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 H3F3AP84243 136 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 PMPCAQ10713 525 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 TNK1Q13470 666 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 CD276Q5ZPR3 534 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ZNF813Q6ZN06 617 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 CREB3L2Q70SY1 520 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 DTX1Q86Y01 620 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ZNF283Q8N7M2 679 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 CHST4Q8NCG5 386 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 OR6M1Q8NGM8 313 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 OR2T35Q8NGX2 323 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 OR14L1PQ8NHC6 308 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SLC25A43Q8WUT9 341 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 NIPAL2Q9H841 368 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms