RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 E7EQL1 145 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 RPP14O95059 124 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 PRF1P14222 555 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 MYL12AP19105 171 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 RIDAP52758 137 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 CSNK2BP67870 215 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 ROM1Q03395 351 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 EGR3Q06889 387 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 UNQ6126/PRO20091Q6UXV3 157 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 FAM220AQ7Z4H9 259 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 LILRB1Q8NHL6 650 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 TMEM80Q96HE8 168 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 DCLRE1CQ96SD1 692 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 DOK1Q99704 481 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 ALG8Q9BVK2 526 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 PLCXD1Q9NUJ7 323 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 MRM2Q9UI43 246 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 TPRKBQ9Y3C4 175 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 J3QLW9 94 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 TBX1O43435 398 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 IGHA1P01876 353 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF19P17023 458 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 DCKP27707 260 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 PCSK6P29122 969 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 THBS4P35443 961 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 FABP6P51161 128 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF121P58317 390 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 PPP1CBP62140 327 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 MVKQ03426 396 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 DRAM2Q6UX65 266 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 FAM57BQ71RH2 274 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 RHOUQ7L0Q8 258 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 NUP37Q8NFH4 326 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 FBXW5Q969U6 566 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 MRPL48Q96GC5 212 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 BCL2L14Q9BZR8 327 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 FGF20Q9NP95 211 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 CHCHD3Q9NX63 227 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 ERVK13-1Q9NX77 482 aa12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 CNOT2Q9NZN8 540 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 DIMT1Q9UNQ2 313 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-208ENST00000556412 METTL15A6NJ78 407 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 HS3ST1O14792 307 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF254O75437 659 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 APOC1P02654 83 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 ADRA2AP08913 450 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 PIPP12273 146 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 EEF1B2P24534 225 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 OTX1P32242 354 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 RGS6P49758 472 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 ETV1P50549 477 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 RPS23P62266 143 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 ACTA2P62736 377 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 ACTG2P63267 376 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 NKX6-1P78426 367 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 GALEQ14376 348 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 GFOD2Q3B7J2 385 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 KRTAP27-1Q3LI81 207 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 RGS7BPQ6MZT1 257 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 DEGS2Q6QHC5 323 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 SGCDQ92629 289 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 APOBEC3DQ96AK3 386 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 C4orf36Q96KX1 117 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 OR2J1Q9GZK6 312 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 CCDC90BQ9GZT6 254 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 NIPAL2Q9H841 368 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 INPP5EQ9NRR6 644 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 ACOXLQ9NUZ1 547 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 TBCCD1Q9NVR7 557 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 PTTG3PQ9NZH4 202 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 STARD10Q9Y365 291 aa12.1□□□□□ -0.47
VIPAS39-208ENST00000556412 TMEM269A0A1B0GVZ9 245 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 VSTM5A8MXK1 200 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 OR4A8P0C604 315 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 CCDC159P0C7I6 412 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 C21orf33P30042 268 aaPredicted RBP12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 GLRXP35754 106 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 OR12D2P58182 307 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 PSMA6P60900 246 aaKnown RBP12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF829Q3KNS6 432 aaPredicted RBP12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 SNAI3Q3KNW1 292 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 LIPNQ5VXI9 398 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 SLC25A40Q8TBP6 338 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 IPCEF1Q8WWN9 437 aaPredicted RBP12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 MYDGFQ969H8 173 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 PGAM5Q96HS1 289 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 DHRS9Q9BPW9 319 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 POFUT1Q9H488 388 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 PAK1IP1Q9NWT1 392 aaPredicted RBP12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 ERVK-18Q9QC07 812 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 DUSP13Q9UII6 198 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 BLOC1S6Q9UL45 172 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 EXOSC1Q9Y3B2 195 aaKnown RBP12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 CMAHPQ9Y471 501 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 DOPEY2Q9Y3R5 2298 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 ICE1Q9Y2F5 2266 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 C5orf63A6NC05 138 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 SULT1C4O75897 302 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 TACSTD2P09758 323 aa12.09□□□□□ -0.47
VIPAS39-208ENST00000556412 ANOS1P23352 680 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms