RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 CT45A9P0DMV2 189 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 HNRNPA2B1P22626 353 aaKnown RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 GPR85P60893 370 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 PPIAP62937 165 aaKnown RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF74Q16587 644 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CT45A2Q5DJT8 189 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 C11orf87Q6NUJ2 197 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 SLC36A1Q7Z2H8 476 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 TIMM29Q9BSF4 260 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ABHD6Q9BV23 337 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 KLF15Q9UIH9 416 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 IGKV1D-42A0A075B6H8 117 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 RFPL4AA6NLU0 287 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 RFPL4AL1F8VTS6 287 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 GSTZ1O43708 216 aaPredicted RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 LRP3O75074 770 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 H2BFMP0C1H6 154 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 OMGP23515 440 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CPT2P23786 658 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CASRP41180 1078 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CLDN6P56747 220 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 FAM76BQ5HYJ3 339 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 SPICQ8N5J4 248 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 OR6N1Q8NGY5 312 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 MMP25Q9NPA2 562 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 LRP12Q9Y561 859 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 DNAJC13O75165 2243 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 EFCAB7A8K855 629 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 XRCC2O43543 280 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 UTS2O95399 124 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 LDOC1O95751 146 aaPredicted RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 S100A9P06702 114 aaKnown RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 SRFP11831 508 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF14P17017 642 aaPredicted RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CD1CP29017 333 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 SDHAP31040 664 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 AKT2P31751 481 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 PRPS1P60891 318 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 NSDHLQ15738 373 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ANKRD16Q6P6B7 361 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 TFAP2EQ6VUC0 442 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ABHD12BQ7Z5M8 362 aaPredicted RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ANGPTL5Q86XS5 388 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 SLAMF9Q96A28 289 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 REEP6Q96HR9 211 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 C4orf45Q96LM5 186 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 PHB2Q99623 299 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 ESRP2Q9H6T0 727 aaKnown RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 AMDHD2Q9Y303 409 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 KIAA2026Q5HYC2 2103 aa13.15□□□□□ -0.3
HOXC11-202ENST00000546378 POLEQ07864 2286 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 G3V3Y1 287 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 LY86O95711 162 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 ALOX5APP20292 161 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 TSFMP43897 325 aaKnown RBP13.14□□□□□ -0.31
HOXC11-202ENST00000546378 FHITP49789 147 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 ACTBP60709 375 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 ACTG1P63261 375 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 TOMM20Q15388 145 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 PRTGQ2VWP7 1150 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 DEFB133Q30KQ1 61 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 HACD4Q5VWC8 232 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 P4HA3Q7Z4N8 544 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 PPP1R3BQ86XI6 285 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 C20orf196Q8IYI0 205 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 C17orf78Q8N4C9 275 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 OR10H5Q8NGA6 315 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 OR4K17Q8NGC6 315 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 SCARF2Q96GP6 870 aaPredicted RBP13.14□□□□□ -0.31
HOXC11-202ENST00000546378 DCBLD2Q96PD2 775 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 ZNF629Q9UEG4 869 aaPredicted RBP13.14□□□□□ -0.31
HOXC11-202ENST00000546378 TICRRQ7Z2Z1 1910 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 ZNF264O43296 627 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 B3GALNT1O75752 331 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 GIMD1P0DJR0 217 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 PRAMEF8Q5VWM4 474 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 PRAMEF7Q5VXH5 474 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 KCNRGQ8N5I3 272 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 SUMF1Q8NBK3 374 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 WBP1Q96G27 269 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 CNTNAP3BQ96NU0 1288 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 GPHA2Q96T91 129 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 PLEKHA1Q9HB21 404 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 SLC17A4Q9Y2C5 497 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 PRELID3BQ9Y3B1 194 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 SHANK1Q9Y566 2161 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 NUP210Q8TEM1 1887 aaPredicted RBP13.14□□□□□ -0.31
HOXC11-202ENST00000546378 hCG_1809904A0A1W2PP81 198 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 A0A1W2PR64 198 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 A0A1W2PRV1 198 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 RAB19A4D1S5 217 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 SNRPGP15A8MWD9 76 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 MPGP29372 298 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 EMP2P54851 167 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 EGR4Q05215 589 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 SLC18B1Q6NT16 456 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 CLEC1AQ8NC01 280 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 APCDD1LQ8NCL9 501 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 OR51E1Q8TCB6 317 aa13.14□□□□□ -0.31
HOXC11-202ENST00000546378 RXFP4Q8TDU9 374 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms