RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 NEIL1Q96FI4 390 aaPredicted RBP12.87□□□□□ -0.35
UBE3B-211ENST00000539843 PITX2Q99697 317 aa12.87□□□□□ -0.35
UBE3B-211ENST00000539843 OR52D1Q9H346 318 aa12.87□□□□□ -0.35
UBE3B-211ENST00000539843 SRA1Q9HD15 236 aaKnown RBP12.87□□□□□ -0.35
UBE3B-211ENST00000539843 MMP26Q9NRE1 261 aa12.87□□□□□ -0.35
UBE3B-211ENST00000539843 KIF17Q9P2E2 1029 aa12.87□□□□□ -0.35
UBE3B-211ENST00000539843 IQCF6A8MYZ5 107 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 F5H0A9 414 aaPredicted RBP12.86□□□□□ -0.35
UBE3B-211ENST00000539843 ARPC3O15145 178 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 IDH3BO43837 385 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 DBHP09172 617 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 ZNF823P16415 610 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 PRTN3P24158 256 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 FPR3P25089 353 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 CDKN2AP42771 156 aaKnown RBP12.86□□□□□ -0.35
UBE3B-211ENST00000539843 TPTEP56180 551 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 COX10Q12887 443 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 KCNJ8Q15842 424 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 ZNF181Q2M3W8 571 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 RPL13AP3Q6NVV1 102 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 DOK3Q7L591 496 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 ZDHHC22Q8N966 263 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 BHLHE23Q8NDY6 225 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 OR52L1Q8NGH7 329 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 OR52E2Q8NGJ4 325 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 OR4C15Q8NGM1 316 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 SPRYD4Q8WW59 207 aaPredicted RBP12.86□□□□□ -0.35
UBE3B-211ENST00000539843 SPTSSAQ969W0 71 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 PYURFQ96I23 114 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 SIGLEC11Q96RL6 698 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 ATF6BQ99941 703 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 SLC30A2Q9BRI3 323 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 SLC22A4Q9H015 551 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 GORASP2Q9H8Y8 452 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 KCNG2Q9UJ96 466 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 B9D1Q9UPM9 204 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 V9GYQ6 96 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 WNK2Q9Y3S1 2297 aa12.86□□□□□ -0.35
UBE3B-211ENST00000539843 TANC2Q9HCD6 1990 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 F5H5K5 113 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 TRAPPC2LH3BP13 241 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 DIRAS1O95057 198 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 LCATP04180 440 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 FABP3P05413 133 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 PPIAL4GP0DN37 164 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 HKR1P10072 659 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 ERFP50548 548 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 MEP1BQ16820 701 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 OTPQ5XKR4 325 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 SHISA2Q6UWI4 295 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 MRPL21Q7Z2W9 205 aaKnown RBP12.85□□□□□ -0.35
UBE3B-211ENST00000539843 MOGAT3Q86VF5 341 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 KLBQ86Z14 1044 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 PARP8Q8N3A8 854 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 CELF2-AS1Q8N7Q2 184 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 OR4K13Q8NH42 304 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 ZNF420Q8TAQ5 688 aaPredicted RBP12.85□□□□□ -0.35
UBE3B-211ENST00000539843 DVL3Q92997 716 aaPredicted RBP12.85□□□□□ -0.35
UBE3B-211ENST00000539843 DHRS1Q96LJ7 313 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 NSMCE2Q96MF7 247 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 TSSK2Q96PF2 358 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 NMNAT3Q96T66 252 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 ELAC2Q9BQ52 826 aaKnown RBP12.85□□□□□ -0.35
UBE3B-211ENST00000539843 ESM1Q9NQ30 184 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 RPRD1BQ9NQG5 326 aaKnown RBP12.85□□□□□ -0.35
UBE3B-211ENST00000539843 NDE1Q9NXR1 346 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 CLN8Q9UBY8 286 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 LHFPL6Q9Y693 200 aa12.85□□□□□ -0.35
UBE3B-211ENST00000539843 IGLV1-36A0A0B4J1U3 117 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 F5H5P2 479 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 FSTL3O95633 263 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 CYB5R3P00387 301 aaPredicted RBP12.84□□□□□ -0.35
UBE3B-211ENST00000539843 WNT2P09544 360 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 SEC61A1P61619 476 aaKnown RBP12.84□□□□□ -0.35
UBE3B-211ENST00000539843 HIST1H3AP68431 136 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 MZT1Q08AG7 82 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 SEC23BQ15437 767 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 SAMD4BQ5PRF9 694 aaKnown RBP12.84□□□□□ -0.35
UBE3B-211ENST00000539843 HIST2H3PS2Q5TEC6 136 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 CORO6Q6QEF8 472 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 HIST2H3AQ71DI3 136 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 PGAP1Q75T13 922 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 LINC00346Q8IVM7 164 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 RNF148Q8N7C7 305 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 SLC26A10Q8NG04 563 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 C7orf34Q96L11 122 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 C1QTNF5Q9BXJ0 243 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 FAM107BQ9H098 131 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 TRIM36Q9NQ86 728 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 ZNF69Q9UC07 566 aa12.84□□□□□ -0.35
UBE3B-211ENST00000539843 IGHV2-70DA0A0C4DH43 119 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 DNAJC9-AS1A6NH13 148 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 HIST1H1CP16403 213 aaKnown RBP12.83□□□□□ -0.36
UBE3B-211ENST00000539843 GGT2P36268 569 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 PITPNBP48739 271 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 PAX8Q06710 450 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 TRAP1Q12931 704 aaKnown RBP12.83□□□□□ -0.36
UBE3B-211ENST00000539843 ZNF404Q494X3 552 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 SLC18B1Q6NT16 456 aa12.83□□□□□ -0.36
UBE3B-211ENST00000539843 TSEN54Q7Z6J9 526 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms