RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 UNC119Q13432 240 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 PHF19Q5T6S3 580 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 DNM1P34Q6PK57 102 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 DEGS2Q6QHC5 323 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 SHISA6Q6ZSJ9 500 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 FJX1Q86VR8 437 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 SLC25A32Q9H2D1 315 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 CTSFQ9UBX1 484 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 PRELID3BQ9Y3B1 194 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 NOP16Q9Y3C1 178 aaKnown RBP17.18■□□□□ 0.34
VPS28-213ENST00000530983 IGHV3-20A0A0C4DH32 117 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 A0A0D9SG52 128 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 CPED1A4D0V7 1026 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 EIF1AYO14602 144 aaKnown RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 CCSO14618 274 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 DAP3P51398 398 aaKnown RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 MMP16P51512 607 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 POU3F1Q03052 451 aaPredicted RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 MEF2DQ14814 521 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 JMJD6Q6NYC1 403 aaPredicted RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 LPCAT3Q6P1A2 487 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 C3orf33Q6P1S2 294 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 RNF133Q8WVZ7 376 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 TMEM234Q8WY98 164 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 FGGYQ96C11 551 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 FOXRED1Q96CU9 486 aaPredicted RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 DUSP15Q9H1R2 295 aaPredicted RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 SAV1Q9H4B6 383 aaPredicted RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 CENPMQ9NSP4 180 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 FAM206AQ9NX38 181 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 GPN3Q9UHW5 284 aaPredicted RBP17.17■□□□□ 0.34
VPS28-213ENST00000530983 RAB22AQ9UL26 194 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 TNFSF18Q9UNG2 199 aa17.17■□□□□ 0.34
VPS28-213ENST00000530983 IGHV1OR21-1A0A087WYE8 117 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 METTL12A8MUP2 240 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 DISC1C4P0D8 188 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 ZNF354AO60765 605 aaPredicted RBP17.16■□□□□ 0.34
VPS28-213ENST00000530983 H2BFMP0C1H6 154 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 ZBTB25P24278 435 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 CXADRP78310 365 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 CDNFQ49AH0 187 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 SLC22A6Q4U2R8 563 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 H1FNTQ75WM6 255 aaPredicted RBP17.16■□□□□ 0.34
VPS28-213ENST00000530983 TRAPPC6BQ86SZ2 158 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 D2HGDHQ8N465 521 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 KCNRGQ8N5I3 272 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 GVQW1Q8N7I0 195 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 OR6S1Q8NH40 331 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 ZBTB8AQ96BR9 441 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 HPF1Q9NWY4 346 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 LOC100509620A0A075B734 347 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 A0A1B0GX78 115 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 METTL21EPA6NDL7 271 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 ZNF217O75362 1048 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 TTRP02766 147 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 BDKRB2P30411 391 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 RNF4P78317 190 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 ZNF345Q14585 488 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 RNASE10Q5GAN6 216 aaKnown RBP17.16■□□□□ 0.34
VPS28-213ENST00000530983 FAM74A1Q5RGS3 127 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 OR52W1Q6IF63 320 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 RAB12Q6IQ22 244 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 C11orf87Q6NUJ2 197 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 SLC25A42Q86VD7 318 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.16■□□□□ 0.34
VPS28-213ENST00000530983 PXT1Q8NFP0 134 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 OR52N4Q8NGI2 321 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 MFSD8Q8NHS3 518 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 LRRC46Q96FV0 321 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 PRRT1Q99946 306 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 MESP1Q9BRJ9 268 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 CST11Q9H112 138 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 RASL12Q9NYN1 266 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 SUSD2Q9UGT4 822 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 SPAG17Q6Q759 2223 aa17.16■□□□□ 0.34
VPS28-213ENST00000530983 ANKUB1A6NFN9 424 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 TMEM200CA6NKL6 621 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 ABCD4O14678 606 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 FBXW4P57775 412 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 B2MP61769 119 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 QRFPP83859 136 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 HSF1Q00613 529 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 PPP1R1AQ13522 171 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 LRRC37A5PQ49AS3 106 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 SEC22AQ96IW7 307 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 PDCD10Q9BUL8 212 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 KLF2Q9Y5W3 355 aaPredicted RBP17.15■□□□□ 0.34
VPS28-213ENST00000530983 SLC25A4P12235 298 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 MPZP25189 248 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 ARHGDIBP52566 201 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 CAPZA1P52907 286 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 HNRNPKP61978 463 aaKnown RBP eCLIP17.15■□□□□ 0.34
VPS28-213ENST00000530983 DEFA5Q01523 94 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 FLI1Q01543 452 aaPredicted RBP17.15■□□□□ 0.34
VPS28-213ENST00000530983 LIN54Q6MZP7 749 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 LYG2Q86SG7 212 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 MISPQ8IVT2 679 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 NUDCD2Q8WVJ2 157 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 ST8SIA1Q92185 356 aa17.15■□□□□ 0.34
VPS28-213ENST00000530983 FAM46BQ96A09 425 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms