RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 POP5Q969H6 163 aaKnown RBP11.54□□□□□ -0.56
TCOF1-215ENST00000515516 SPTSSAQ969W0 71 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 NSL1Q96IY1 281 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 JMJD8Q96S16 334 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 ATF6BQ99941 703 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 TMPRSS13Q9BYE2 586 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 TRIM15Q9C019 465 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 MUC13Q9H3R2 512 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 FN3KQ9H479 309 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 EGLN3Q9H6Z9 239 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 TMEM100Q9NV29 134 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 KCNG2Q9UJ96 466 aa11.54□□□□□ -0.56
TCOF1-215ENST00000515516 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.53□□□□□ -0.569e-7■■■■□ 22.6
TCOF1-215ENST00000515516 STAB1Q9NY15 2570 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 OR6C68A6NDL8 312 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 LRRC30A6NM36 301 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 LCATP04180 440 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 MDH2P40926 338 aaKnown RBP11.53□□□□□ -0.56
TCOF1-215ENST00000515516 ERFP50548 548 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 TRAP1Q12931 704 aaKnown RBP11.53□□□□□ -0.56
TCOF1-215ENST00000515516 FAM98BQ52LJ0 330 aaKnown RBP11.53□□□□□ -0.56
TCOF1-215ENST00000515516 CFAP77Q6ZQR2 320 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 LRRC28Q86X40 367 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-215ENST00000515516 MUC20Q8N307 709 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-215ENST00000515516 OR9Q2Q8NGE9 314 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 OR2T4Q8NH00 348 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 ZFAND2BQ8WV99 257 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 CCT8L2Q96SF2 557 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 SUCNR1Q9BXA5 334 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 C1QTNF5Q9BXJ0 243 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 MAGIXQ9H6Y5 334 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 WDR76Q9H967 626 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 TBC1D23Q9NUY8 699 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 DCAF16Q9NXF7 216 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 CYB5R1Q9UHQ9 305 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 LYVE1Q9Y5Y7 322 aa11.53□□□□□ -0.56
TCOF1-215ENST00000515516 IQCF6A8MYZ5 107 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 TMEM178BH3BS89 294 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 RGS9O75916 674 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-215ENST00000515516 VENTXO95231 258 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 AVPP01185 164 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 GASTP01350 101 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 ACSM4P0C7M7 580 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 IRF2P14316 349 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 FPR2P25090 351 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 RAD23AP54725 363 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 RASSF6Q6ZTQ3 369 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 BPIFB2Q8N4F0 458 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 FITM2Q8N6M3 262 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 AQP11Q8NBQ7 271 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 BHLHE23Q8NDY6 225 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 OR10AD1Q8NGE0 317 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 SPRYD4Q8WW59 207 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-215ENST00000515516 MEGF10Q96KG7 1140 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 LRGUKQ96M69 825 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 REEP1Q9H902 201 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 PATZ1Q9HBE1 687 aaKnown RBP11.52□□□□□ -0.57
TCOF1-215ENST00000515516 GCM1Q9NP62 436 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 IL20Q9NYY1 176 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 BAIAP2Q9UQB8 552 aa11.52□□□□□ -0.57
TCOF1-215ENST00000515516 PPIAL4EA0A075B759 164 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 PPIAL4CA0A0B4J2A2 164 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 PPIAL4DF5H284 164 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 TRIM77I1YAP6 450 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 IFNGP01579 166 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 PPIAL4FP0DN26 164 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 ADRA2CP18825 462 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 ATP6V1B2P21281 511 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 CALB2P22676 271 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 CPT2P23786 658 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 ZFP36P26651 326 aaKnown RBP11.51□□□□□ -0.57
TCOF1-215ENST00000515516 PYCR1P32322 319 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 GGT2P36268 569 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 SLC6A9P48067 706 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 MMP16P51512 607 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 TRIM25Q14258 630 aaKnown RBP11.51□□□□□ -0.57
TCOF1-215ENST00000515516 ZMYND11Q15326 602 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 TAF13Q15543 124 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 KRTAP27-1Q3LI81 207 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 ESCO2Q56NI9 601 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 C12orf54Q6X4T0 127 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 COLCA1Q6ZS62 124 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 C1orf229Q6ZS94 237 aaPredicted RBP11.51□□□□□ -0.57
TCOF1-215ENST00000515516 USP43Q70EL4 1123 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 PGAP1Q75T13 922 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 MRPL21Q7Z2W9 205 aaKnown RBP11.51□□□□□ -0.57
TCOF1-215ENST00000515516 C1orf87Q8N0U7 546 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 CYB561A3Q8NBI2 242 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 CCDC197Q8NCU1 140 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 OR4C15Q8NGM1 316 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 SLCO4A1Q96BD0 722 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 SLC30A2Q9BRI3 323 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 BTBD10Q9BSF8 475 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 MRI1Q9BV20 369 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 TSSK6Q9BXA6 273 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 OR5V1Q9UGF6 321 aa11.51□□□□□ -0.57
TCOF1-215ENST00000515516 NOP16Q9Y3C1 178 aaKnown RBP11.51□□□□□ -0.57
TCOF1-215ENST00000515516 SAMHD1Q9Y3Z3 626 aaKnown RBP11.51□□□□□ -0.57
TCOF1-215ENST00000515516 TVP23AA6NH52 213 aa11.5□□□□□ -0.57
TCOF1-215ENST00000515516 F5H5P2 479 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms