RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PIPOXQ9P0Z9 390 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 PTRH2Q9Y3E5 179 aaKnown RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 ASCC3Q8N3C0 2202 aaKnown RBP13.19□□□□□ -0.3
NUP54-217ENST00000514987 ALPK2Q86TB3 2170 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 A0A1W2PNR3 127 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 LINC00862A6NCI5 91 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 ZNF736B4DX44 427 aaPredicted RBP13.19□□□□□ -0.3
NUP54-217ENST00000514987 G3V3Q6 166 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 CD74P04233 296 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 VSIG10L2P0DP72 767 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 COX6A1P12074 109 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 GUCA1AP43080 201 aaPredicted RBP13.19□□□□□ -0.3
NUP54-217ENST00000514987 EIF1AXP47813 144 aaKnown RBP13.19□□□□□ -0.3
NUP54-217ENST00000514987 SSR4P51571 173 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 DSCR4P56555 118 aaPredicted RBP13.19□□□□□ -0.3
NUP54-217ENST00000514987 OR10S1Q8NGN2 331 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 OR2Y1Q8NGV0 311 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 NTNG2Q96CW9 530 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 ZC3H10Q96K80 434 aaKnown RBP13.19□□□□□ -0.3
NUP54-217ENST00000514987 CHIAQ9BZP6 476 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 IRF2BPLQ9H1B7 796 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 KCNK15Q9H427 330 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 FSCN3Q9NQT6 498 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 UBQLN2Q9UHD9 624 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 RHBDD3Q9Y3P4 386 aa13.19□□□□□ -0.3
NUP54-217ENST00000514987 CACNA1CQ13936 2221 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 PLSCR5A0PG75 271 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 TUBAL3A6NHL2 446 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 DISC1C4P0D8 188 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 UMODP07911 640 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 QDPRP09417 244 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 ZNF17P17021 662 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 MPZP25189 248 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 CTSSP25774 331 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 SFTPDP35247 375 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 POU4F3Q15319 338 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 CFAP77Q6ZQR2 320 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 OR2W3Q7Z3T1 314 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 ZNF584Q8IVC4 421 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 OR2AK2Q8NG84 335 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 OR4D10Q8NGI6 311 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 OR4D6Q8NGJ1 314 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 OR1J2Q8NGS2 313 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 PAQR8Q8TEZ7 354 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 AQP3Q92482 292 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 PNPLA2Q96AD5 504 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 INTS12Q96CB8 462 aaKnown RBP13.18□□□□□ -0.3
NUP54-217ENST00000514987 TMEM185BQ9H7F4 350 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 CNTD2Q9H8S5 307 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 DNAH14Q0VDD8 3507 aa13.18□□□□□ -0.3
NUP54-217ENST00000514987 A0A1B0GTI1 187 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 GJE1A6NN92 205 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 HMSDA8MTL9 139 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 M0R233 179 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 LMX1BO60663 402 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 CHRM2P08172 466 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 LIFP15018 202 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 ZNF28P17035 718 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 TBPP20226 339 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 CCL1P22362 96 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 OR3A3P47888 321 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 ZNF133P52736 654 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 GMFBP60983 142 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 RAB14P61106 215 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 CSNK2A1P68400 391 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 H3F3AP84243 136 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 INPP5JQ15735 1006 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 ESCO2Q56NI9 601 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 ARMC10Q8N2F6 343 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 DTWD2Q8NBA8 298 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 CCDC54Q8NEL0 328 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 OR5M1Q8NGP8 315 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 OR8S1Q8NH09 359 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 MAFAQ8NHW3 353 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 ADAT3Q96EY9 351 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 PRRT1Q99946 306 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 DPCDQ9BVM2 203 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 B3GNT4Q9C0J1 378 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 AKIRIN1Q9H9L7 192 aaPredicted RBP13.17□□□□□ -0.3
NUP54-217ENST00000514987 SLC2A8Q9NY64 477 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 MAB21L2Q9Y586 359 aa13.17□□□□□ -0.3
NUP54-217ENST00000514987 TMEM82A0PJX8 343 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 MEIS3P1A6NDR6 274 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 F5H5P2 479 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 H3BUI4 141 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 L7N2F9 121 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 DNPH1O43598 174 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 KLF7O75840 302 aaPredicted RBP13.16□□□□□ -0.3
NUP54-217ENST00000514987 AMY2AP04746 511 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 UBBP0CG47 229 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 NFYAP23511 347 aaPredicted RBP13.16□□□□□ -0.3
NUP54-217ENST00000514987 FOLR3P41439 243 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 QRFPP83859 136 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 CSRP2Q16527 193 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 ZNF260Q3ZCT1 412 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 C4orf46Q504U0 113 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 CLLU1Q5K131 121 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 C10orf128Q5T292 105 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 PRAMEF20Q5VT98 475 aa13.16□□□□□ -0.3
NUP54-217ENST00000514987 IDO2Q6ZQW0 420 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms