RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, human

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNB1-208	ENST00000504788	MMP16	P51512	607 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	NANOS3	P60323	173 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	UBE2N	P61088	152 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	PCBD1	P61457	104 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	EGR3	Q06889	387 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	POU4F2	Q12837	409 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	EIF2B1	Q14232	305 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	SWI5	Q1ZZU3	235 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	SNAI3	Q3KNW1	292 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	BEX5	Q5H9J7	111 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	C11orf71	Q6IPW1	123 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	FDX2	Q6P4F2	183 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	LRRN1	Q6UXK5	716 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	WFDC8	Q8IUA0	241 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	EGFL6	Q8IUX8	553 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	SLC35F2	Q8IXU6	374 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF679	Q8IYX0	411 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	PRSS35	Q8N3Z0	413 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	PLPP7	Q8NBV4	271 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	SLC30A7	Q8NEW0	376 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	RORB	Q92753	470 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	SPSB4	Q96A44	273 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	MUCL1	Q96DR8	90 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	PELI1	Q96FA3	418 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	MARS2	Q96GW9	593 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	MNT	Q99583	582 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	KCNJ15	Q99712	375 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	ATF6B	Q99941	703 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	SOX7	Q9BT81	388 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	CDCA4	Q9BXL8	241 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	TEX12	Q9BXU0	123 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	VCX	Q9H320	206 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	ISG20L2	Q9H9L3	353 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	MOV10	Q9HCE1	1003 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	TBCCD1	Q9NVR7	557 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	PLEK2	Q9NYT0	353 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	CNOT2	Q9NZN8	540 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	PRRC2A	P48634	2157 aa	Known RBP	4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	TEX15	Q9BXT5	2789 aa		4.25	□□□□□ -1.73
LMNB1-208	ENST00000504788	USF3	Q68DE3	2245 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZAN	Q9Y493	2812 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788		A0A1B0GTI1	187 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788		J3QW42	95 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788		M0R135	149 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788		M0R1B8	84 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	OVOL3	O00110	214 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LILRA1	O75019	489 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	SULT1C4	O75897	302 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	HLA-DQA2	P01906	255 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	TTR	P02766	147 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	CDK1	P06493	297 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	SOD3	P08294	240 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	CD79A	P11912	226 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF250	P15622	560 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF823	P16415	610 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	DCK	P27707	260 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	GLRX	P35754	106 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	UCP2	P55851	309 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	OR12D2	P58182	307 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	PSMA6	P60900	246 aa	Known RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	RPS7	P62081	194 aa	Known RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	MFGE8	Q08431	387 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ST3GAL4	Q11206	333 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	GALE	Q14376	348 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ADIPOQ	Q15848	244 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ALKBH6	Q3KRA9	238 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF672	Q499Z4	452 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LCN1P1	Q5VSP4	162 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LIPN	Q5VXI9	398 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ASPHD2	Q6ICH7	369 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	CRIP3	Q6Q6R5	217 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF322	Q6U7Q0	402 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	TMEM108	Q6UXF1	575 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	PLEKHG7	Q6ZR37	379 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LHFPL3	Q86UP9	236 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	DTX2	Q86UW9	622 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	SYS1	Q8N2H4	156 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ACBD7	Q8N6N7	88 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	NANOGP1	Q8N7R0	232 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	NANOS1	Q8WY41	292 aa	Known RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	RGP1	Q92546	391 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	OTULIN	Q96BN8	352 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LRRC46	Q96FV0	321 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF799	Q96GE5	643 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LYZL4	Q96KX0	146 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	CNBD2	Q96M20	576 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788		Q96MT0	163 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	DCLRE1C	Q96SD1	692 aa	Known RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	DOK1	Q99704	481 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	TTTY10	Q9BZA0	68 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	LIME1	Q9H400	295 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF442	Q9H7R0	627 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	CA10	Q9NS85	328 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	ACOXL	Q9NUZ1	547 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	MYEF2	Q9P2K5	600 aa	Known RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	STARD10	Q9Y365	291 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	RPL36	Q9Y3U8	105 aa	Known RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	RNF115	Q9Y4L5	304 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms