RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 GLYATQ6IB77 296 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 CCDC80Q76M96 950 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 KRT73Q86Y46 540 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 ARMC8Q8IUR7 673 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 NPEPL1Q8NDH3 523 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 GPR32P1Q8NGA4 272 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 UTP4Q969X6 686 aaKnown RBP13.63□□□□□ -0.23
VIM-208ENST00000497849 HAVCR1Q96D42 359 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 MEGF10Q96KG7 1140 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 MCHR1Q99705 422 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 TRIM15Q9C019 465 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 SMURF2Q9HAU4 748 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 TBCCD1Q9NVR7 557 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 NECAP2Q9NVZ3 263 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 TIMM10BQ9Y5J6 103 aa13.63□□□□□ -0.23
VIM-208ENST00000497849 IGHV3-64DA0A0J9YX35 117 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 MCIDASD6RGH6 385 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 H0YHG0 523 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 M0R3H8 397 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 FMO6PO60774 539 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 ABHD16AO95870 558 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 HIST1H2ABP04908 130 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 CST2P09228 141 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 UMPSP11172 480 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 HSD17B1P14061 328 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 TNFRSF1BP20333 461 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 CD247P20963 164 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 PMELP40967 661 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 NPTX1Q15818 432 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 DUSP7Q16829 419 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 ARMC4Q5T2S8 1044 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 INTS11Q5TA45 600 aaKnown RBP13.62□□□□□ -0.23
VIM-208ENST00000497849 DHRS7BQ6IAN0 325 aaPredicted RBP13.62□□□□□ -0.23
VIM-208ENST00000497849 TTC33Q6PID6 262 aaPredicted RBP13.62□□□□□ -0.23
VIM-208ENST00000497849 SLC25A47Q6Q0C1 308 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 HIST3H2AQ7L7L0 130 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 NANOGNBQ7Z5D8 188 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 PATL1Q86TB9 770 aaKnown RBP13.62□□□□□ -0.23
VIM-208ENST00000497849 TSPYL5Q86VY4 417 aaPredicted RBP13.62□□□□□ -0.23
VIM-208ENST00000497849 SLC30A8Q8IWU4 369 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 ATG16L2Q8NAA4 619 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 OR10AD1Q8NGE0 317 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 HDAC2Q92769 488 aaKnown RBP13.62□□□□□ -0.23
VIM-208ENST00000497849 HIST1H2ACQ93077 130 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 ZNF426Q9BUY5 554 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 RASSF4Q9H2L5 321 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 KIF17Q9P2E2 1029 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 STARD10Q9Y365 291 aa13.62□□□□□ -0.23
VIM-208ENST00000497849 A0A1W2PRG6 482 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 SERPINB7O75635 380 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 CIB2O75838 187 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 TUBG1P23258 451 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 PSMB10P40306 273 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 MS4A2Q01362 244 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 DBPQ10586 325 aaPredicted RBP13.61□□□□□ -0.23
VIM-208ENST00000497849 HERPUD1Q15011 391 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 ZNF181Q2M3W8 571 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 CYBRD1Q53TN4 286 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 ARL9Q6T311 187 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 DCDC5Q6ZRR9 648 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 MOGAT3Q86VF5 341 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 PIP4P2Q8N4L2 257 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 OR4D11Q8NGI4 311 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 SLC26A7Q8TE54 656 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 LHX4Q969G2 390 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 FAM162AQ96A26 154 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 WDFY2Q96P53 400 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 SIRPDQ9H106 197 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 DPAGT1Q9H3H5 408 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 MEPEQ9NQ76 525 aaPredicted RBP13.61□□□□□ -0.23
VIM-208ENST00000497849 TUBG2Q9NRH3 451 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 SLC13A4Q9UKG4 626 aa13.61□□□□□ -0.23
VIM-208ENST00000497849 CPSF4LA6NMK7 179 aaKnown RBP13.6□□□□□ -0.23
VIM-208ENST00000497849 SERPINA1P01009 418 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 DAP3P51398 398 aaKnown RBP13.6□□□□□ -0.23
VIM-208ENST00000497849 ENDOGQ14249 297 aaKnown RBP13.6□□□□□ -0.23
VIM-208ENST00000497849 SPATS1Q496A3 300 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 ENTPD8Q5MY95 495 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 PGM2L1Q6PCE3 622 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 Q6ZTK2 550 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 RBM45Q8IUH3 476 aaKnown RBP13.6□□□□□ -0.23
VIM-208ENST00000497849 OR5AS1Q8N127 324 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 C19orf18Q8NEA5 215 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 OR6T1Q8NGN1 323 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 LRTOMTQ8WZ04 291 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 SGCDQ92629 289 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 TPD52L3Q96J77 140 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 CTSZQ9UBR2 303 aa13.6□□□□□ -0.23
VIM-208ENST00000497849 NDRG4Q9ULP0 352 aaKnown RBP13.6□□□□□ -0.23
VIM-208ENST00000497849 EPPK1P58107 5090 aaKnown RBP13.6□□□□□ -0.23
VIM-208ENST00000497849 ARPC2O15144 300 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 MLNRO43193 412 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 ZNF682O95780 498 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 LIPFP07098 398 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 AQP2P41181 271 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 CD47Q08722 323 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 COX10Q12887 443 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 SLC35E4Q6ICL7 350 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 CYP2R1Q6VVX0 501 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 FOXL2NBQ6ZUU3 175 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms