RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ZNF613Q6PF04 617 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 B3GNT8Q7Z7M8 397 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 LINC01551Q86U37 167 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 DND1Q8IYX4 353 aaKnown RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 ZNF444Q8N0Y2 327 aaPredicted RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 LYG1Q8N1E2 194 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 ATPAF2Q8N5M1 289 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 MS4A15Q8N5U1 240 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 KIR3DL3Q8N743 410 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 ARL14EPQ8N8R7 260 aaPredicted RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 OR4N2Q8NGD1 307 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 OR52B6Q8NGF0 335 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 OR6T1Q8NGN1 323 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 OR1J2Q8NGS2 313 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 TERB2Q8NHR7 220 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 ART4Q93070 314 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 UPRTQ96BW1 309 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 GALMQ96C23 342 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 IMP4Q96G21 291 aaKnown RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 ZC3HAV1LQ96H79 300 aaKnown RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 C20orf173Q96LM9 149 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 OR2M2Q96R28 347 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 OR11A1Q9GZK7 315 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 VN1R1Q9GZP7 353 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 FAM49AQ9H0Q0 323 aaPredicted RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 SEMA6AQ9H2E6 1030 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 CPVLQ9H3G5 476 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 REEP4Q9H6H4 257 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 NIPAL2Q9H841 368 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 FGF20Q9NP95 211 aaPredicted RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 SPANXA1Q9NS26 97 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 C14orf105Q9NVL8 296 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 ZNF224Q9NZL3 707 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 VPS29Q9UBQ0 182 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 RSL24D1Q9UHA3 163 aaKnown RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 SCP2D1Q9UJQ7 156 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 KCNS2Q9ULS6 477 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 SNX12Q9UMY4 172 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 WDR83OSQ9Y284 106 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 NUP153P49790 1475 aaKnown RBP3.69□□□□□ -1.82
BRCA1-220ENST00000492859 RTL1A6NKG5 1358 aa3.69□□□□□ -1.82
BRCA1-220ENST00000492859 KDM5AP29375 1690 aaKnown RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 A0A087WUJ7 227 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 MEIKINA0A087WXM9 373 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 A0A096LPI6 279 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 A0A0U1RQF3 1178 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 RPS10-NUDT3A0A1W2PQS6 291 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 ANKRD20A5PA0PJZ0 165 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SERINC4A6NH21 518 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 KRBOX1C9JBD0 128 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 F5H6K3 240 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 F8W735 103 aaPredicted RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 MANBAO00462 879 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 EI24O14681 340 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 MPDU1O75352 247 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 LYPLA1O75608 230 aaPredicted RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 C1orf105O95561 183 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 NUDT3O95989 172 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 ADORA3P0DMS8 318 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 ESDP10768 282 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SRD5A1P18405 259 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 PGCP20142 388 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 HIST1H1TP22492 207 aaPredicted RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 APLNRP35414 380 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 VHLP40337 213 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 QARSP47897 775 aaKnown RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SGSHP51688 502 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 DLX6P56179 175 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 TCTAP57738 103 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 TAS2R43P59537 309 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 NCALDP61601 193 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 PAFAH1B2P68402 229 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 ADAM8P78325 824 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 MRPS6P82932 125 aaKnown RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 PSG4Q00888 419 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 EDDM3AQ14507 147 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SHHQ15465 462 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 C4orf26Q17RF5 130 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SNAI3Q3KNW1 292 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 MIIPQ5JXC2 388 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 TMEM78Q5T7P6 136 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 HLA-DQA1Q5Y7H0 255 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 RTL6Q6ICC9 239 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 WDR74Q6RFH5 385 aaPredicted RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 KIRREL2Q6UWL6 708 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 LRRC55Q6ZSA7 311 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 MBOAT2Q6ZWT7 520 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 CBLL1Q75N03 491 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 TSEN54Q7Z6J9 526 aaKnown RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 AMIGO3Q86WK7 504 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 PNLDC1Q8NA58 520 aaKnown RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 OR52E4Q8NGH9 312 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SMAP2Q8WU79 429 aaPredicted RBP3.68□□□□□ -1.82
BRCA1-220ENST00000492859 EEF1AKMT1Q8WVE0 214 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 TCTEX1D2Q8WW35 142 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SSMEM1Q8WWF3 244 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 SDSLQ96GA7 329 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 PAGE5Q96GU1 130 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 GRAMD2BQ96HH9 432 aa3.68□□□□□ -1.82
BRCA1-220ENST00000492859 IL17FQ96PD4 163 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms