RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 LYNX1P0DP58 116 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 HOXB4P17483 251 aaPredicted RBP12.61□□□□□ -0.39
USP4-212ENST00000486549 NAA10P41227 235 aaPredicted RBP12.61□□□□□ -0.39
USP4-212ENST00000486549 MAGEB1P43366 347 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 SLC6A9P48067 706 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 APOFQ13790 326 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 HLXQ14774 488 aaPredicted RBP12.61□□□□□ -0.39
USP4-212ENST00000486549 TAF13Q15543 124 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 MOGQ16653 247 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 RSPO1Q2MKA7 263 aaPredicted RBP12.61□□□□□ -0.39
USP4-212ENST00000486549 STMN2Q93045 179 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 SPTSSAQ969W0 71 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 APOBEC3DQ96AK3 386 aaPredicted RBP12.61□□□□□ -0.39
USP4-212ENST00000486549 CMBLQ96DG6 245 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 C17orf100A8MU93 164 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ANKRD65E5RJM6 399 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 M0R135 149 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TPD52L2O43399 206 aaKnown RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 SPRY3O43610 288 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TLX2O43763 284 aaPredicted RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 NCR1O76036 304 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 BAG2O95816 211 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 LY6G6DO95868 133 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 HPXP02790 462 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 LCATP04180 440 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 SLC2A5P22732 501 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 POLR2IP36954 125 aaKnown RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 ZNF81P51508 661 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 PRKXP51817 358 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TPTEP56180 551 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 PSG7Q13046 419 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ZSCAN26Q16670 478 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TSTQ16762 297 aaKnown RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 PCK2Q16822 640 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 KRTAP27-1Q3LI81 207 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TEX30Q5JUR7 227 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 SLC35D3Q5M8T2 416 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 C12orf73Q69YU5 71 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 BCDIN3DQ7Z5W3 292 aaKnown RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 NAA40Q86UY6 237 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TIGD4Q8IY51 512 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 TCEANCQ8N8B7 351 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 OR5L1Q8NGL2 311 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ST7LQ8TDW4 575 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 UBASH3BQ8TF42 649 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ZNF799Q96GE5 643 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 COG8Q96MW5 612 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 IL4I1Q96RQ9 567 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 PIMREGQ9BSJ6 248 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 GABARAPL3Q9BY60 117 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 MARCH7Q9H992 704 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 MYOZ1Q9NP98 299 aaPredicted RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 DDX28Q9NUL7 540 aaKnown RBP12.6□□□□□ -0.39
USP4-212ENST00000486549 N6AMT1Q9Y5N5 214 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ORC6Q9Y5N6 252 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ZANQ9Y493 2812 aa12.6□□□□□ -0.39
USP4-212ENST00000486549 ZSCAN5BA6NJL1 495 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 ZNF878C9JN71 531 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 J3QW42 95 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 MRPL3P09001 348 aaKnown RBP12.59□□□□□ -0.39
USP4-212ENST00000486549 SLC25A16P16260 332 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 TUBG1P23258 451 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 MMP15P51511 669 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 CCL8P80075 99 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 GABPB1Q06547 395 aaPredicted RBP12.59□□□□□ -0.39
USP4-212ENST00000486549 LCN1P1Q5VSP4 162 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 Q71RC1 249 aaPredicted RBP12.59□□□□□ -0.39
USP4-212ENST00000486549 SHFQ7M4L6 423 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 OR5AS1Q8N127 324 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 PQLC1Q8N2U9 271 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 CBR4Q8N4T8 237 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 TMEM163Q8TC26 289 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 AMELYQ99218 206 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 ABHD6Q9BV23 337 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 C1QTNF5Q9BXJ0 243 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 MSL2Q9HCI7 577 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 TUBG2Q9NRH3 451 aa12.59□□□□□ -0.39
USP4-212ENST00000486549 PURGQ9UJV8 347 aaKnown RBP12.59□□□□□ -0.39
USP4-212ENST00000486549 LOC390937A0A1W2PQ73 354 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 CCDC182A6NF36 153 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 IGHV1-46P01743 117 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 ALPLP05186 524 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 SLC2A1P11166 492 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 HSD11B1P28845 292 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 ALDH3A2P51648 485 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 PRSS12P56730 875 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 GGTLC2Q14390 218 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 PCGF3Q3KNV8 242 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 ZIK1Q3SY52 487 aaPredicted RBP12.58□□□□□ -0.4
USP4-212ENST00000486549 OR2T2Q6IF00 324 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 ZNF283Q8N7M2 679 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 THEM6Q8WUY1 208 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 KCNJ15Q99712 375 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 C9orf16Q9BUW7 83 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 CYSLTR2Q9NS75 346 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 DECR2Q9NUI1 292 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 USE1Q9NZ43 259 aa12.58□□□□□ -0.4
USP4-212ENST00000486549 H2AFY2Q9P0M6 372 aaPredicted RBP12.58□□□□□ -0.4
USP4-212ENST00000486549 NDUFS8O00217 210 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 CDC14BO60729 498 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms