RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ACTG1P63261 375 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 TUSC1Q2TAM9 212 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 SAMD4BQ5PRF9 694 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC18B1Q6NT16 456 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 ZNF620Q6ZNG0 422 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 OR5L1Q8NGL2 311 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 C22orf15Q8WYQ4 148 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 MEGF10Q96KG7 1140 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC30A2Q9BRI3 323 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 IFT27Q9BW83 186 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 C1QTNF5Q9BXJ0 243 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 NSRP1Q9H0G5 558 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 WDR76Q9H967 626 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 PNRC2Q9NPJ4 139 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 TRIM77I1YAP6 450 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 RENP00797 406 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 GGT2P36268 569 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 MDH2P40926 338 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 PRSS12P56730 875 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 PGBD2Q6P3X8 592 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 LINC00346Q8IVM7 164 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 BPIFB2Q8N4F0 458 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 ZDHHC22Q8N966 263 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 ATG16L2Q8NAA4 619 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 BHLHE23Q8NDY6 225 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 SDR9C7Q8NEX9 313 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 OR13G1Q8NGZ3 307 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 ZNF420Q8TAQ5 688 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 NSMCE2Q96MF7 247 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 JMJD8Q96S16 334 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 CDRT15Q96T59 188 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 IL1RAPQ9NPH3 570 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 ARL8BQ9NVJ2 186 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 CYB5R1Q9UHQ9 305 aa15.78■□□□□ 0.12
CCDC88B-206ENST00000473405 TMEM89A2RUT3 159 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 CEACAM18A8MTB9 384 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 IQCF6A8MYZ5 107 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 ATP8B1O43520 1251 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 ACSM4P0C7M7 580 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 ZNF12P17014 697 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 TSPAN31Q12999 210 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 ZNF154Q13106 437 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC27A4Q6P1M0 643 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 MUC20Q8N307 709 aaPredicted RBP15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 MCUR1Q96AQ8 359 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 ZNF582Q96NG8 517 aaPredicted RBP15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 ATF6BQ99941 703 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 RBM4Q9BWF3 364 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 EGLN3Q9H6Z9 239 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 MRPL22Q9NWU5 206 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 INSIG2Q9Y5U4 225 aa15.77■□□□□ 0.12
CCDC88B-206ENST00000473405 IGHV3-64DA0A0J9YX35 117 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 F5H5P2 479 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 IFNL4K9M1U5 179 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 CYB5R3P00387 301 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 NOS3P29474 1203 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 GK2Q14410 553 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 KLF17Q5JT82 389 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 CPLX4Q7Z7G2 160 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 ZDHHC21Q8IVQ6 265 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 POP5Q969H6 163 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 PITX2Q99697 317 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 BTBD10Q9BSF8 475 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 TAGLN3Q9UI15 199 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 TMCC3Q9ULS5 477 aa15.76■□□□□ 0.11
CCDC88B-206ENST00000473405 IDH3BO43837 385 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF205O95201 554 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 PSKH1P11801 424 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 SELEP16581 610 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 IFNGR2P38484 337 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 SRP9P49458 86 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 PAX2Q02962 417 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 TRAP1Q12931 704 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 ECH1Q13011 328 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 SLC36A3Q495N2 470 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 ESCO2Q56NI9 601 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 CLEC12AQ5QGZ9 265 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 SLC35F1Q5T1Q4 408 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 NAA40Q86UY6 237 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 MOGAT3Q86VF5 341 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 DEFB107AQ8IZN7 70 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 OR52E2Q8NGJ4 325 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 OR10S1Q8NGN2 331 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 GNPDA2Q8TDQ7 276 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 MAP6Q96JE9 813 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 PLA2G12AQ9BZM1 189 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 TMEM165Q9HC07 324 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 LRCH1Q9Y2L9 728 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 LYVE1Q9Y5Y7 322 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 AUP1Q9Y679 476 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 CDH10Q9Y6N8 788 aa15.75■□□□□ 0.11
CCDC88B-206ENST00000473405 F5H5K5 113 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 BHLHE40O14503 412 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 HLA-DPB1P04440 258 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 WNT2P09544 360 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 ATP6V1B2P21281 511 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 ANOS1P23352 680 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 PMELP40967 661 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 GYS2P54840 703 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms