RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 H3BUX3 64 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 PHYHO14832 338 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 HDAC3O15379 428 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 SLC16A6O15403 523 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ENSAO43768 121 aaKnown RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 FAM20BO75063 409 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 CH25HO95992 272 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 PTHP01270 115 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ABHD2P08910 425 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 GYPEP15421 78 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 S100A3P33764 101 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 LIPAP38571 399 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 CRATP43155 626 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 DSTNP60981 165 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 NAA20P61599 178 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 MAB21L1Q13394 359 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ENDOGQ14249 297 aaKnown RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 TAF11Q15544 211 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 RNF151Q2KHN1 245 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 DMRTC1Q5HYR2 192 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 CLEC12AQ5QGZ9 265 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 CEP85LQ5SZL2 805 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ANXA8L1Q5VT79 327 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 C1orf94Q6P1W5 598 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF572Q7Z3I7 529 aaPredicted RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 VMO1Q7Z5L0 202 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 SNX32Q86XE0 403 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 Q8N7P7 452 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 BOLLQ8N9W6 283 aaKnown RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 OR6S1Q8NH40 331 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 WIPF2Q8TF74 440 aaPredicted RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 HDAC2Q92769 488 aaKnown RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 TESCQ96BS2 214 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 HAVCR1Q96D42 359 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 OR5M11Q96RB7 305 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 TXLNGYQ9BZA5 131 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 SLC19A3Q9BZV2 496 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 DPAGT1Q9H3H5 408 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 WDR76Q9H967 626 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 SIAEQ9HAT2 523 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 C12orf10Q9HB07 376 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 CCNB1IP1Q9NPC3 277 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 SERTAD4Q9NUC0 356 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 UFSP2Q9NUQ7 469 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ING3Q9NXR8 418 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ASIC5Q9NY37 505 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 PSMC3IPQ9P2W1 217 aaPredicted RBP4.29□□□□□ -1.72
PTPN4-209ENST00000469511 P2RX2Q9UBL9 471 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 BTNL2Q9UIR0 455 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 IGHV3OR15-7A0A075B7D8 119 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 A0A0G2JPF8 293 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 WDR91A4D1P6 747 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 HNRNPCL2B2RXH8 293 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 HNRNPCL3B7ZW38 293 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 E9PBE3 544 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 KPNA4O00629 521 aaPredicted RBP4.28□□□□□ -1.72
PTPN4-209ENST00000469511 COPEO14579 308 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ADAM20O43506 726 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 RNF13O43567 381 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 HNRNPCL1O60812 293 aaKnown RBP4.28□□□□□ -1.72
PTPN4-209ENST00000469511 SPAG7O75391 227 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 TUSC2O75896 110 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 TFF1P04155 84 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 HNRNPCL4P0DMR1 293 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ACADSP16219 412 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 KRT4P19013 534 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 FUT1P19526 365 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ANOS1P23352 680 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 TNFSF4P23510 183 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 EPHA3P29320 983 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 SERPINB5P36952 375 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 HTR5AP47898 357 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 CCT5P48643 541 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF84P51523 738 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF133P52736 654 aaPredicted RBP4.28□□□□□ -1.72
PTPN4-209ENST00000469511 CRISP3P54108 245 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 UGT2B15P54855 530 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 CLRN1P58418 232 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 MRPS34P82930 218 aaKnown RBP4.28□□□□□ -1.72
PTPN4-209ENST00000469511 EMX1Q04741 257 aaPredicted RBP4.28□□□□□ -1.72
PTPN4-209ENST00000469511 NPTX1Q15818 432 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF124Q15973 351 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF74Q16587 644 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 TMEM95Q3KNT9 176 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 C10orf128Q5T292 105 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 FAM27BQ5VT28 67 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 METTL11BQ5VVY1 283 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ULK3Q6PHR2 472 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 SLC25A47Q6Q0C1 308 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ARL9Q6T311 187 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 DCDC5Q6ZRR9 648 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF826PQ6ZT77 177 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 BTN2A1Q7KYR7 527 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 RNF144BQ7Z419 303 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 RBM45Q8IUH3 476 aaKnown RBP4.28□□□□□ -1.72
PTPN4-209ENST00000469511 NUDCD3Q8IVD9 361 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 GALNT4Q8N4A0 578 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF781Q8N8C0 355 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 ZBTB34Q8NCN2 500 aa4.28□□□□□ -1.72
PTPN4-209ENST00000469511 BHLHE23Q8NDY6 225 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms