RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 ELOVL3Q9HB03 270 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ERVK13-1Q9NX77 482 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 EIF3KQ9UBQ5 218 aaKnown RBP13.13□□□□□ -0.31
NPHP4-205ENST00000466897 SPEF1Q9Y4P9 236 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 SETXQ7Z333 2677 aaKnown RBP13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ACOD1A6NK06 481 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 ATP6V1G2-DDX39BF2Z307 99 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 H3BSA7 217 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 MRPS14O60783 128 aaKnown RBP13.12□□□□□ -0.31
NPHP4-205ENST00000466897 CTAG2O75638 210 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 KRT8P05787 483 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 CDK1P06493 297 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 DBHP09172 617 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 LIMS3P0CW19 117 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 LIMS4P0CW20 117 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 MYL12AP19105 171 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 WNT5AP41221 380 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 RAD52P43351 418 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 MMP16P51512 607 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 RIDAP52758 137 aaKnown RBP13.12□□□□□ -0.31
NPHP4-205ENST00000466897 SPOCK1Q08629 439 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 LRRN1Q6UXK5 716 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.12□□□□□ -0.31
NPHP4-205ENST00000466897 PIAS4Q8N2W9 510 aaPredicted RBP13.12□□□□□ -0.31
NPHP4-205ENST00000466897 STX19Q8N4C7 294 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 SNX33Q8WV41 574 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 SLC7A6Q92536 515 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 HS3ST6Q96QI5 342 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 ALG8Q9BVK2 526 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 CDCA4Q9BXL8 241 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 BCL2L14Q9BZR8 327 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF442Q9H7R0 627 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 SP140LQ9H930 580 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 PAK1IP1Q9NWT1 392 aaPredicted RBP13.12□□□□□ -0.31
NPHP4-205ENST00000466897 SLCO1C1Q9NYB5 712 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 MRM2Q9UI43 246 aaKnown RBP13.12□□□□□ -0.31
NPHP4-205ENST00000466897 IKZF2Q9UKS7 526 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 PLCE1Q9P212 2302 aa13.12□□□□□ -0.31
NPHP4-205ENST00000466897 METTL15A6NJ78 407 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 F5H5K5 113 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 SMPD2O60906 423 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 TACSTD2P09758 323 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 CCL2P13500 99 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 CCNOP22674 350 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 SSTR2P30874 369 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 CX3CR1P49238 355 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 UCP2P55851 309 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 RPS23P62266 143 aaKnown RBP13.11□□□□□ -0.31
NPHP4-205ENST00000466897 TLE4Q04727 773 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 HGFACQ04756 655 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 MRPL28Q13084 256 aaKnown RBP13.11□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF829Q3KNS6 432 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-205ENST00000466897 SLC22A25Q6T423 547 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF704Q6ZNC4 412 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-205ENST00000466897 SPATC1Q76KD6 591 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 PRSS45Q7RTY3 260 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 FAM220AQ7Z4H9 259 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF295-AS1Q8N0V1 137 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 OR52N1Q8NH53 320 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 APOBEC3DQ96AK3 386 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-205ENST00000466897 MOB1AQ9H8S9 216 aa13.11□□□□□ -0.31
NPHP4-205ENST00000466897 CAB39Q9Y376 341 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-205ENST00000466897 HRNRQ86YZ3 2850 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-205ENST00000466897 ABCA4P78363 2273 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 TMEM129A0AVI4 362 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 TRIM64A6NGJ6 449 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 PTGES3LE9PB15 166 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 SRSF10O75494 262 aaKnown RBP13.1□□□□□ -0.31
NPHP4-205ENST00000466897 ADRA2AP08913 450 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 COL8A1P27658 744 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 GLRXP35754 106 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF672Q499Z4 452 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-205ENST00000466897 KCTD21Q4G0X4 260 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 LIPNQ5VXI9 398 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 RFPL4BQ6ZWI9 263 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 PRSS48Q7RTY5 328 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 LHFPL3Q86UP9 236 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF101Q8IZC7 436 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF283Q8N7M2 679 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 KBTBD8Q8NFY9 601 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 OR52H1Q8NGJ2 320 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 CA10Q9NS85 328 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 FAM206AQ9NX38 181 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 CHCHD3Q9NX63 227 aaKnown RBP13.1□□□□□ -0.31
NPHP4-205ENST00000466897 GRIP1Q9Y3R0 1128 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 HECTD1Q9ULT8 2610 aa13.1□□□□□ -0.31
NPHP4-205ENST00000466897 DCHS2Q6V1P9 2916 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 CRYBG3Q68DQ2 2970 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 PSMD9O00233 223 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 RGS10O43665 173 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 C21orf33P30042 268 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-205ENST00000466897 SLC6A9P48067 706 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 ETV1P50549 477 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 PRKXP51817 358 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF121P58317 390 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-205ENST00000466897 MVKQ03426 396 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 SNTB2Q13425 540 aaKnown RBP13.09□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF544Q6NX49 715 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 FDX2Q6P4F2 183 aa13.09□□□□□ -0.31
NPHP4-205ENST00000466897 TMPRSS11AQ6ZMR5 421 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms