RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 MARCH7Q9H992 704 aa15.21■□□□□ 0.03
COL7A1-205ENST00000465238 C8orf4Q9NR00 106 aa15.21■□□□□ 0.03
COL7A1-205ENST00000465238 IMPAD1Q9NX62 359 aa15.21■□□□□ 0.03
COL7A1-205ENST00000465238 ATPIF1Q9UII2 106 aa15.21■□□□□ 0.03
COL7A1-205ENST00000465238 FBXO9Q9UK97 447 aaPredicted RBP15.21■□□□□ 0.03
COL7A1-205ENST00000465238 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.21■□□□□ 0.02
COL7A1-205ENST00000465238 LCKP06239 509 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 SLC2A5P22732 501 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 EFNB3Q15768 340 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 ADIPOQQ15848 244 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 PCK2Q16822 640 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 NXNL2Q5VZ03 156 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 CFAP77Q6ZQR2 320 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 MEPCEQ7L2J0 689 aaKnown RBP15.2■□□□□ 0.02
COL7A1-205ENST00000465238 SHFQ7M4L6 423 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 DCXRQ7Z4W1 244 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 OR8J1Q8NGP2 316 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 FAM81AQ8TBF8 368 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 C4orf45Q96LM5 186 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 TEAD3Q99594 435 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 VRK1Q99986 396 aaPredicted RBP15.2■□□□□ 0.02
COL7A1-205ENST00000465238 ELOVL3Q9HB03 270 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 GRIP1Q9Y3R0 1128 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 GMPPBQ9Y5P6 360 aa15.2■□□□□ 0.02
COL7A1-205ENST00000465238 LOC390937A0A1W2PQ73 354 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 ABHD16AO95870 558 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 ZNF16P17020 682 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 PEX2P28328 305 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 WNT5AP41221 380 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 NR4A2P43354 598 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 EIF2B1Q14232 305 aaKnown RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 GGTLC2Q14390 218 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 TAF13Q15543 124 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 AADACL4Q5VUY2 407 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 RGS7BPQ6MZT1 257 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 DPY19L4Q7Z388 723 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 BCDIN3DQ7Z5W3 292 aaKnown RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 GID4Q8IVV7 300 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 PHC2Q8IXK0 858 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 TIGD4Q8IY51 512 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 PACRGLQ8N7B6 248 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 ZNF555Q8NEP9 628 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 OR1J1Q8NGS3 322 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 TRUB1Q8WWH5 349 aaKnown RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 SLC7A6Q92536 515 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 MAP6Q96JE9 813 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 RDH12Q96NR8 316 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 DCLRE1CQ96SD1 692 aaKnown RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 ATF6BQ99941 703 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 SHARPINQ9H0F6 387 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 PLK3Q9H4B4 646 aa15.19■□□□□ 0.02
COL7A1-205ENST00000465238 SMPD3Q9NY59 655 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-205ENST00000465238 SLC22A31A6NKX4 558 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 CASQ2O14958 399 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-205ENST00000465238 LMX1BO60663 402 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 PPOXP50336 477 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 SELENOVP59797 346 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 SLC34A1Q06495 639 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 C1orf174Q8IYL3 243 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 ZNF101Q8IZC7 436 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 ZNF454Q8N9F8 522 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 ZNF540Q8NDQ6 660 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 ABHD4Q8TB40 342 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 IPCEF1Q8WWN9 437 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-205ENST00000465238 MRPL24Q96A35 216 aaKnown RBP15.18■□□□□ 0.02
COL7A1-205ENST00000465238 SLAMF6Q96DU3 332 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 CENPMQ9NSP4 180 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 TBCCD1Q9NVR7 557 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 FAM118AQ9NWS6 357 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 NKX1-2Q9UD57 310 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-205ENST00000465238 DUSP13Q9UII6 198 aa15.18■□□□□ 0.02
COL7A1-205ENST00000465238 LOC100130705A0A1B0GUX0 176 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 CCDC182A6NF36 153 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 F5H5K5 113 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 PHF1O43189 567 aaPredicted RBP15.17■□□□□ 0.02
COL7A1-205ENST00000465238 SELENOFO60613 162 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 ICMTO60725 284 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 DBHP09172 617 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 PSKH1P11801 424 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 NAA10P41227 235 aaPredicted RBP15.17■□□□□ 0.02
COL7A1-205ENST00000465238 RGS6P49758 472 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 TPTEP56180 551 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 CARTPTQ16568 116 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 ZNF718Q3SXZ3 478 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 OGFRL1Q5TC84 451 aaPredicted RBP15.17■□□□□ 0.02
COL7A1-205ENST00000465238 FAM166AQ6J272 317 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 SLC16A9Q7RTY1 509 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 SPTSSAQ969W0 71 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 MRPL37Q9BZE1 423 aaKnown RBP15.17■□□□□ 0.02
COL7A1-205ENST00000465238 RAB1BQ9H0U4 201 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 VCXQ9H320 206 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 RNPEPL1Q9HAU8 725 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 PNRC2Q9NPJ4 139 aaKnown RBP15.17■□□□□ 0.02
COL7A1-205ENST00000465238 KCNS2Q9ULS6 477 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 FZR1Q9UM11 496 aa15.17■□□□□ 0.02
COL7A1-205ENST00000465238 SVEP1Q4LDE5 3571 aa15.16■□□□□ 0.02
COL7A1-205ENST00000465238 E9PQ18 207 aa15.16■□□□□ 0.02
COL7A1-205ENST00000465238 NGFP01138 241 aa15.16■□□□□ 0.02
COL7A1-205ENST00000465238 GCH1P30793 250 aa15.16■□□□□ 0.02
COL7A1-205ENST00000465238 THBS2P35442 1172 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms