RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 IER3IP1Q9Y5U9 82 aa11.12□□□□□ -0.63
HMGB3-204ENST00000448905 ARHGAP32A7KAX9 2087 aa11.12□□□□□ -0.63
HMGB3-204ENST00000448905 IQCF6A8MYZ5 107 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 F5H5P2 479 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 CXCR6O00574 342 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 PHYHO14832 338 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 SLC22A2O15244 555 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 GMNNO75496 209 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 DBHP09172 617 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 MDKP21741 143 aaPredicted RBP11.11□□□□□ -0.63
HMGB3-204ENST00000448905 NPY4RP50391 375 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 RAD23AP54725 363 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 LIPEQ05469 1076 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 KRT72Q14CN4 511 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 SLC36A3Q495N2 470 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 DCDC5Q6ZRR9 648 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 CBLL1Q75N03 491 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 JAZF1Q86VZ6 243 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 POU5F2Q8N7G0 328 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 BHLHE23Q8NDY6 225 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 OR2AJ1Q8NGZ0 328 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 RP9Q8TA86 221 aaKnown RBP11.11□□□□□ -0.63
HMGB3-204ENST00000448905 SPRYD4Q8WW59 207 aaPredicted RBP11.11□□□□□ -0.63
HMGB3-204ENST00000448905 SLC22A4Q9H015 551 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 VIPAS39Q9H9C1 493 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 SRA1Q9HD15 236 aaKnown RBP11.11□□□□□ -0.63
HMGB3-204ENST00000448905 TRIM36Q9NQ86 728 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 ARGLU1Q9NWB6 273 aaPredicted RBP11.11□□□□□ -0.63
HMGB3-204ENST00000448905 ERVK-18Q9QC07 812 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 RPS6KA6Q9UK32 745 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 CAPN7Q9Y6W3 813 aa11.11□□□□□ -0.63
HMGB3-204ENST00000448905 TRAV40A0A0B4J280 105 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 A0A1W2PRQ8 180 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 FAM181BA6NEQ2 426 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 SRRM5B3KS81 715 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 H0YL77 283 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 SOCS2O14508 198 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 NDUFA2O43678 99 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 ENSAO43768 121 aaKnown RBP11.1□□□□□ -0.63
HMGB3-204ENST00000448905 SERPINA1P01009 418 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 H1F0P07305 194 aaKnown RBP11.1□□□□□ -0.63
HMGB3-204ENST00000448905 OMGP23515 440 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 RBMXP38159 391 aaKnown RBP11.1□□□□□ -0.63
HMGB3-204ENST00000448905 GATA4P43694 442 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 ERFP50548 548 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 FGF12P61328 243 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 HNRNPA0Q13151 305 aaKnown RBP11.1□□□□□ -0.63
HMGB3-204ENST00000448905 DGCR6Q14129 220 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 OCLNQ16625 522 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 DEFB112Q30KQ8 113 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 MIDNQ504T8 468 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 WDR25Q64LD2 544 aaPredicted RBP11.1□□□□□ -0.63
HMGB3-204ENST00000448905 TMEM86BQ8N661 226 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 TBC1D15Q8TC07 691 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 SLC7A13Q8TCU3 470 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 FAM162AQ96A26 154 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 FAM46AQ96IP4 442 aaKnown RBP11.1□□□□□ -0.63
HMGB3-204ENST00000448905 CCT8L2Q96SF2 557 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 PITX2Q99697 317 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 PRDM13Q9H4Q3 707 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 CMTM6Q9NX76 183 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 SIGLEC7Q9Y286 467 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 ENPP4Q9Y6X5 453 aa11.1□□□□□ -0.63
HMGB3-204ENST00000448905 IGHV3-64DA0A0J9YX35 117 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 UNC119BA6NIH7 251 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 F5H5K5 113 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 P2RY10O00398 339 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 IMPA2O14732 288 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 TXNDC12O95881 172 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 RENP00797 406 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 LCATP04180 440 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 ZNF26P17031 533 aaPredicted RBP11.09□□□□□ -0.63
HMGB3-204ENST00000448905 RHCEP18577 417 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 MDH1P40925 334 aaKnown RBP11.09□□□□□ -0.63
HMGB3-204ENST00000448905 CDKN2AP42771 156 aaKnown RBP11.09□□□□□ -0.63
HMGB3-204ENST00000448905 SMIM11AP58511 58 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 HIST1H3AP68431 136 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 PDCD1Q15116 288 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 FGD3Q5JSP0 725 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 HIST2H3PS2Q5TEC6 136 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 SMARCD3Q6STE5 483 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 BRD3OSQ6XYD6 125 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 Q6YL49 198 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 HIST2H3AQ71DI3 136 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 PGAP1Q75T13 922 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.09□□□□□ -0.63
HMGB3-204ENST00000448905 SLC15A3Q8IY34 581 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 PNLDC1Q8NA58 520 aaKnown RBP11.09□□□□□ -0.63
HMGB3-204ENST00000448905 Q8TCH9 128 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 HSH2DQ96JZ2 352 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 GPX7Q96SL4 187 aaPredicted RBP11.09□□□□□ -0.63
HMGB3-204ENST00000448905 PCGF1Q9BSM1 259 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 TRIM15Q9C019 465 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 WDR76Q9H967 626 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 FN3KRPQ9HA64 309 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 EFCAB1Q9HAE3 211 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 TNFRSF19Q9NS68 423 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 B9D1Q9UPM9 204 aa11.09□□□□□ -0.63
HMGB3-204ENST00000448905 A0A1B0GWJ7 208 aa11.08□□□□□ -0.64
HMGB3-204ENST00000448905 M0QZ24 198 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms