RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 LRP12Q9Y561 859 aa25.28■■□□□ 1.64
USP42-202ENST00000404008 RGS6P49758 472 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 RPS23P62266 143 aaKnown RBP25.27■■□□□ 1.64
USP42-202ENST00000404008 EGR3Q06889 387 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 ZNF544Q6NX49 715 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 DRAM2Q6UX65 266 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 COLCA1Q6ZS62 124 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 NAA40Q86UY6 237 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 HIST2H2ABQ8IUE6 130 aaPredicted RBP25.27■■□□□ 1.64
USP42-202ENST00000404008 C1QTNF5Q9BXJ0 243 aa25.27■■□□□ 1.64
USP42-202ENST00000404008 PSMD9O00233 223 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 FADS2O95864 444 aaKnown RBP25.26■■□□□ 1.63
USP42-202ENST00000404008 APOBEC3AP31941 199 aaPredicted RBP25.26■■□□□ 1.63
USP42-202ENST00000404008 PRKXP51817 358 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 C1orf174Q8IYL3 243 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 ZNF679Q8IYX0 411 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 OR52I1Q8NGK6 324 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 OR1J1Q8NGS3 322 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 CNBD2Q96M20 576 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 MROQ9BYG7 248 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 PLCXD1Q9NUJ7 323 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 MYRFQ9Y2G1 1151 aa25.26■■□□□ 1.63
USP42-202ENST00000404008 J3QW42 95 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 IGHA1P01876 353 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 LCKP06239 509 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 CX3CR1P49238 355 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 FABP6P51161 128 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 ERVS71-1P61550 626 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 ZNF85Q03923 595 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 ADIPOQQ15848 244 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 C6orf141Q5SZD1 244 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 C20orf204Q6ZNR8 217 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 ACBD7Q8N6N7 88 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 NRGNQ92686 78 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 APOBEC3DQ96AK3 386 aaPredicted RBP25.25■■□□□ 1.63
USP42-202ENST00000404008 DOK1Q99704 481 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 RHNO1Q9BSD3 238 aa25.25■■□□□ 1.63
USP42-202ENST00000404008 FGF20Q9NP95 211 aaPredicted RBP25.25■■□□□ 1.63
USP42-202ENST00000404008 ZNF254O75437 659 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 TTKP33981 857 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 SLC6A9P48067 706 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 PPP1CBP62140 327 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 MSMPQ1L6U9 139 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 ZNF283Q8N7M2 679 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 BPIFB6Q8NFQ5 453 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 Q9H521 79 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 NIPAL2Q9H841 368 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 FAIMQ9NVQ4 179 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 IKZF2Q9UKS7 526 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 CMAHPQ9Y471 501 aa25.24■■□□□ 1.63
USP42-202ENST00000404008 DAPL1A0PJW8 107 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 IRGMA1A4Y4 181 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 MAGEB4O15481 346 aaPredicted RBP25.23■■□□□ 1.63
USP42-202ENST00000404008 XPNPEP2O43895 674 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 APOC1P02654 83 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 OR4A8P0C604 315 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 DANCRP0C864 163 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 ZNF684Q5T5D7 378 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 RGS7BPQ6MZT1 257 aaPredicted RBP25.23■■□□□ 1.63
USP42-202ENST00000404008 LIME1Q9H400 295 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 POFUT1Q9H488 388 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 MRM2Q9UI43 246 aaKnown RBP25.23■■□□□ 1.63
USP42-202ENST00000404008 STARD10Q9Y365 291 aa25.23■■□□□ 1.63
USP42-202ENST00000404008 DENRO43583 198 aaKnown RBP25.22■■□□□ 1.63
USP42-202ENST00000404008 DSCAMO60469 2012 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 FAM20BO75063 409 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 LCATP04180 440 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 DCTDP32321 178 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 SERPINF1P36955 418 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 CACNA1DQ01668 2161 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 SPATA46Q5T0L3 261 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 FBXL14Q8N1E6 418 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 MUC15Q8N387 334 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 SLC25A40Q8TBP6 338 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 GGHQ92820 318 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 MARS2Q96GW9 593 aaKnown RBP25.22■■□□□ 1.63
USP42-202ENST00000404008 LURAP1Q96LR2 239 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 COG8Q96MW5 612 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 JAM3Q9BX67 310 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 INPP5EQ9NRR6 644 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 PSORS1C1Q9UIG5 152 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 PCDHGB5Q9Y5G0 923 aa25.22■■□□□ 1.63
USP42-202ENST00000404008 VSTM5A8MXK1 200 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 SOD3P08294 240 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 SLC2A1P11166 492 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 PIPP12273 146 aaPredicted RBP25.21■■□□□ 1.63
USP42-202ENST00000404008 ZNF250P15622 560 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 TUBG1P23258 451 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 ANOS1P23352 680 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 RIDAP52758 137 aaKnown RBP25.21■■□□□ 1.63
USP42-202ENST00000404008 ZNF121P58317 390 aaPredicted RBP25.21■■□□□ 1.63
USP42-202ENST00000404008 PSMA6P60900 246 aaKnown RBP25.21■■□□□ 1.63
USP42-202ENST00000404008 CSNK2BP67870 215 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 PAMR1Q6UXH9 720 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 PRSS45Q7RTY3 260 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 SNX33Q8WV41 574 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 MRPL24Q96A35 216 aaKnown RBP25.21■■□□□ 1.63
USP42-202ENST00000404008 OR2J1Q9GZK6 312 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 TUBG2Q9NRH3 451 aa25.21■■□□□ 1.63
USP42-202ENST00000404008 CNOT2Q9NZN8 540 aaKnown RBP25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms