RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RTL10Q7L3V2 364 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 OR13C9Q8NGT0 318 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 EFSO43281 561 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 SCRN3Q0VDG4 424 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 ZNF260Q3ZCT1 412 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 CLEC9AQ6UXN8 241 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 TMEM104Q8NE00 496 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 ARL5BQ96KC2 179 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 TWSG1Q9GZX9 223 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 G6PC2Q9NQR9 355 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 CD2P06729 351 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 RPL27P61353 136 aaKnown RBP18.73■□□□□ 0.59
CTCF-202ENST00000401394 VWA2Q5GFL6 755 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 TTLL10Q6ZVT0 673 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 SLC25A42Q86VD7 318 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 SOHLH2Q9NX45 425 aa18.73■□□□□ 0.59
CTCF-202ENST00000401394 LDLRAD4O15165 306 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 CD74P04233 296 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 RCC1P18754 421 aaPredicted RBP18.72■□□□□ 0.59
CTCF-202ENST00000401394 FLI1Q01543 452 aaPredicted RBP18.72■□□□□ 0.59
CTCF-202ENST00000401394 NKAPLQ5M9Q1 402 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 TGM7Q96PF1 710 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 CHMP1AQ9HD42 196 aaPredicted RBP18.72■□□□□ 0.59
CTCF-202ENST00000401394 WBP1LQ9NX94 342 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 IGHV3-20A0A0C4DH32 117 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 IGHV5-51A0A0C4DH38 117 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 C9JQL5 133 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 SSX5O60225 188 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 HTR3BO95264 441 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 CRYBA1P05813 215 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 CD1CP29017 333 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 GFOD2Q3B7J2 385 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 LIPHQ8WWY8 451 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 FOXRED1Q96CU9 486 aaPredicted RBP18.72■□□□□ 0.59
CTCF-202ENST00000401394 PIK3IP1Q96FE7 263 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 ADAM19Q9H013 955 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 OR52A1Q9UKL2 312 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 RHBDD3Q9Y3P4 386 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 SDCBPO00560 298 aaPredicted RBP18.72■□□□□ 0.59
CTCF-202ENST00000401394 VSIG8P0DPA2 414 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 RLN3Q8WXF3 142 aa18.72■□□□□ 0.59
CTCF-202ENST00000401394 MRPS33Q9Y291 106 aaKnown RBP18.72■□□□□ 0.59
CTCF-202ENST00000401394 OR4K17Q8NGC6 315 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 ZNF519Q8TB69 540 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 MITD1Q8WV92 249 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 ZNF629Q9UEG4 869 aaPredicted RBP18.71■□□□□ 0.59
CTCF-202ENST00000401394 CYB5R1Q9UHQ9 305 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 ZNF205O95201 554 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 CTSEP14091 401 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 ABOP16442 354 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 PNLDC1Q8NA58 520 aaKnown RBP18.71■□□□□ 0.59
CTCF-202ENST00000401394 OR52N5Q8NH56 324 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 RXFP4Q8TDU9 374 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 AQP3Q92482 292 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 GABRG3Q99928 467 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 PIGMQ9H3S5 423 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 CYTL1Q9NRR1 136 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 HHLA2Q9UM44 414 aa18.71■□□□□ 0.59
CTCF-202ENST00000401394 TCRBV21S2A2A0A5A6 115 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 MED19A0JLT2 244 aaPredicted RBP18.7■□□□□ 0.58
CTCF-202ENST00000401394 IL33O95760 270 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 SLC25A4P12235 298 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 BCKDHBP21953 392 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 CTAG1AP78358 180 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 ZNF528Q3MIS6 628 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 OR5D18Q8NGL1 313 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 GPBAR1Q8TDU6 330 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 FAM131CQ96AQ9 280 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 PHB2Q99623 299 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 GSKIPQ9P0R6 139 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 FRYQ5TBA9 3013 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 MYO7BQ6PIF6 2116 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 A0A0A6YYD4 124 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 EPOPA6NHQ4 379 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 SOCS1O15524 211 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 TNFP01375 233 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 CRHP06850 196 aa18.7■□□□□ 0.58
CTCF-202ENST00000401394 IGLV3-21P80748 117 aaPredicted RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 MST1LQ2TV78 715 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 MEX3AA1L020 520 aaKnown RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 PSMB6P28072 239 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 TDGQ13569 410 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 ZNF345Q14585 488 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 TMED7-TICAM2A0A0A6YYA0 188 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 ZNF354AO60765 605 aaPredicted RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 SRSF10O75494 262 aaKnown RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 RAD51DO75771 328 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 SERPINA5P05154 406 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 MUC1P15941 1255 aaPredicted RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 RAB13P51153 203 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 DLX2Q07687 328 aaPredicted RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 ELAVL1Q15717 326 aaKnown RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 EMC4Q5J8M3 183 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 DRAM2Q6UX65 266 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 RBMS3Q6XE24 437 aaKnown RBP18.69■□□□□ 0.58
CTCF-202ENST00000401394 C9orf40Q8IXQ3 194 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 SVBPQ8N300 66 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 NPRL2Q8WTW4 380 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 OR10C1Q96KK4 312 aa18.69■□□□□ 0.58
CTCF-202ENST00000401394 CRB3Q9BUF7 120 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms