RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PAFAH1B2P68402 229 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CCL7P80098 99 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ILF3Q12906 894 aaKnown RBP eCLIP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CCDC6Q16204 474 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CYP51A1Q16850 503 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ECSCRQ19T08 205 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 LINC00242Q5T6M2 205 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF57Q68EA5 555 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 FRMPD2BQ6IN97 320 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 NIPAL1Q6NVV3 410 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 NT5DC3Q86UY8 548 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PLA2G4DQ86XP0 818 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 APLFQ8IW19 511 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PIANPQ8IYJ0 282 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 VKORC1L1Q8N0U8 176 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 STK40Q8N2I9 435 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 Q8N402 240 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SVOPLQ8N434 492 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 OR2V1Q8NHB1 315 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 C11orf45Q8TAV5 145 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 MAFIPQ8WZ33 124 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 OR5P2Q8WZ92 322 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 BORCS5Q969J3 196 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 PTH2Q96A98 100 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 FLYWCH2Q96CP2 140 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ADGRG7Q96K78 797 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ATF6BQ99941 703 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 MRPL45Q9BRJ2 306 aaKnown RBP3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ING2Q9H160 280 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 GAREM1Q9H706 876 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 IFT46Q9NQC8 304 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CTPS2Q9NRF8 586 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SDHAF2Q9NX18 166 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 OPN4Q9UHM6 478 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 POU2F3Q9UKI9 436 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 ING4Q9UNL4 249 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 SNX24Q9Y343 169 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 L3MBTL1Q9Y468 752 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 CPQQ9Y646 472 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 STYXL1Q9Y6J8 313 aa3.36□□□□□ -1.87
HMGB1-204ENST00000399489 FAM135BQ49AJ0 1406 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 DNMT1P26358 1616 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 ZBED9Q6R2W3 1325 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 UQCRHLA0A096LP55 91 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 LOC100131303A0A0U1RQF7 123 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1B0GVI7 797 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 SLC5A10A0PJK1 596 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 H0Y980 276 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 SULT2B1O00204 365 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 BET1O15155 118 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 SLC31A1O15431 190 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FGF16O43320 207 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 ENSAO43768 121 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 UGT1A9O60656 530 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FRAT2O75474 233 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 NGFP01138 241 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 GCGP01275 180 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 UQCRHP07919 91 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 CD55P08174 381 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 MELTFP08582 738 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 SLC2A1P11166 492 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF35P13682 527 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 GFAPP14136 432 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 NQO1P15559 274 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 IGFBP5P24593 272 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 CRABP1P29762 137 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 HOXA1P49639 335 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 UGT2B15P54855 530 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 STXBP1P61764 594 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FLI1Q01543 452 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 TLE4Q04727 773 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 RAB31Q13636 194 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FASTKQ14296 549 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 ARL6IP1Q15041 203 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 NECTIN1Q15223 517 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 MLF2Q15773 248 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 HACD4Q5VWC8 232 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 LCLAT1Q6UWP7 414 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FAM19A1Q7Z5A9 133 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 MYPOPQ86VE0 399 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 HORMAD1Q86X24 394 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 RIBC1Q8N443 379 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 C12orf29Q8N999 325 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 TMEM35BQ8NCS4 154 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 OR10G8Q8NGN5 311 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 OR56B4Q8NH76 319 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 OR10J5Q8NHC4 309 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 RFESDQ8TAC1 157 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 SPPL2AQ8TCT8 520 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 ACTRT1Q8TDG2 376 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 CXorf40AQ8TE69 158 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 TFB1MQ8WVM0 346 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 TMED6Q8WW62 240 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 C11orf52Q96A22 123 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 CMTM7Q96FZ5 175 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 ANKRD36BP1Q96IX9 119 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 POM121L2Q96KW2 1035 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FOXC2Q99958 501 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 BCL2L14Q9BZR8 327 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 IL25Q9H293 177 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms