RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 LRFN5Q96NI6 719 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 LYSMD1Q96S90 227 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 SLX4Q8IY92 1834 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 HIDE1A8MVS5 230 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 CST2P09228 141 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 FLT3LGP49771 235 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 ZP2Q05996 745 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 DUSP8Q13202 625 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 PMS2P11Q13670 270 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 PHLDA2Q53GA4 152 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 ADAD2Q8NCV1 583 aaKnown RBP8.43□□□□□ -1.06
COL28A1-201ENST00000399429 OR51F2Q8NH61 342 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 SEH1LQ96EE3 360 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 DMRTA2Q96SC8 542 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 NICN1Q9BSH3 213 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 ELOVL1Q9BW60 279 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 TEX101Q9BY14 249 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 C6orf106Q9H6K1 298 aaPredicted RBP8.43□□□□□ -1.06
COL28A1-201ENST00000399429 FLVCR1Q9Y5Y0 555 aa8.43□□□□□ -1.06
COL28A1-201ENST00000399429 PRAMEF27A3QJZ7 478 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF749O43361 778 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 MOSPD3O75425 235 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZGLP1P0C6A0 271 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM225BP0DP42 221 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 BLVRBP30043 206 aaPredicted RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF93P35789 620 aaPredicted RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 NANOS3P60323 173 aaKnown RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TLE4Q04727 773 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 SSBP1Q04837 148 aaKnown RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 OGFOD3Q6PK18 319 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 PPP1R3BQ86XI6 285 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF695Q8IW36 515 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM151BQ8IW70 566 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 NRSN1Q8IZ57 195 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 CMTM1Q8IZ96 169 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 EXD3Q8N9H8 876 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 OR14L1PQ8NHC6 308 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 PISDQ9UG56 409 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 DKKL1Q9UK85 242 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 B3GALT5Q9Y2C3 310 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 WSB1Q9Y6I7 421 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ABCA3Q99758 1704 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TRAV14DV4A0A0A6YYC5 116 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 CEBPZOSA8MTT3 80 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 METTL12A8MUP2 240 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 NPIPB9F8W1W9 429 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TCF21O43680 179 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 C1QL1O75973 258 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 PTBP3O95758 552 aaKnown RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 CD1CP29017 333 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 RPP30P78346 268 aaKnown RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ALKBH2Q6NS38 261 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 PLXDC2Q6UX71 529 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TMPRSS11FQ6ZWK6 438 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 SLC36A1Q7Z2H8 476 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 MS4A6EQ96DS6 147 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 GPR87Q9BY21 358 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ALX4Q9H161 411 aaPredicted RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF638Q14966 1978 aaKnown RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 COLCA2A8K830 154 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 PIN1P1O15428 100 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 NHLH2Q02577 135 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF266Q14584 549 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 LCN15Q6UWW0 184 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 SLC35G3Q8N808 338 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 OR52E1Q8NGJ3 308 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 PRRX2Q99811 253 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 GPR173Q9NS66 373 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 STARD5Q9NSY2 213 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 ZDHHC8Q9ULC8 765 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 LHX6Q9UPM6 363 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 VSIG4Q9Y279 399 aa8.42□□□□□ -1.06
COL28A1-201ENST00000399429 TP53BP1Q12888 1972 aaPredicted RBP8.42□□□□□ -1.06
COL28A1-201ENST00000399429 XKRY2A2RUG3 117 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 FAM221BA6H8Z2 402 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 H7BYZ3 331 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 GPR137BO60478 399 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 GJA4P35212 333 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 SNU13P55769 128 aaKnown RBP8.41□□□□□ -1.06
COL28A1-201ENST00000399429 TAS2R46P59540 309 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 OR5I1Q13606 314 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 IQCJQ1A5X6 159 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 ARHGAP11BQ3KRB8 267 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 PLPP4Q5VZY2 271 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 ASTLQ6HA08 431 aaPredicted RBP8.41□□□□□ -1.06
COL28A1-201ENST00000399429 GLIPR1L1Q6UWM5 242 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF793Q6ZN11 406 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 MAMDC2Q7Z304 686 aaPredicted RBP8.41□□□□□ -1.06
COL28A1-201ENST00000399429 MR1Q95460 341 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 LIN37Q96GY3 246 aaPredicted RBP8.41□□□□□ -1.06
COL28A1-201ENST00000399429 CASD1Q96PB1 797 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 SPHK2Q9NRA0 654 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 FBXO34Q9NWN3 711 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 OR5AC2Q9NZP5 309 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 HSF4Q9ULV5 492 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 MRPS28Q9Y2Q9 187 aaKnown RBP8.41□□□□□ -1.06
COL28A1-201ENST00000399429 IGLV3-16A0A075B6K0 115 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 ELOA3CA0A087WX78 387 aaPredicted RBP8.41□□□□□ -1.06
COL28A1-201ENST00000399429 A0A1B0GTQ1 180 aa8.41□□□□□ -1.06
COL28A1-201ENST00000399429 LOC107986453A0A1B0GWG9 222 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms