RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TAS2R45P59539 299 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 KIR2DS1Q14954 304 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 MARCH3Q86UD3 253 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 DTWD2Q8NBA8 298 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 EXTL1Q92935 676 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 NOL4LQ96MY1 436 aaPredicted RBP10.81□□□□□ -0.68
SYNPO-202ENST00000394243 IKZF5Q9H5V7 419 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 FAM221AA4D161 298 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 GLTPD2A6NH11 291 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF250P15622 560 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 EDDM3BP56851 147 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 EDDM3AQ14507 147 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 FAHD1Q6P587 224 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 EXD3Q8N9H8 876 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 OR51E1Q8TCB6 317 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 MSL2Q9HCI7 577 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 FMN2Q9NZ56 1722 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 HMGN4O00479 90 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SPINT2O43291 252 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 TBPP20226 339 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 TPBGQ13641 420 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CDK5R1Q15078 307 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SLC35B3Q9H1N7 401 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SEMA6CQ9H3T2 930 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 LHX6Q9UPM6 363 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 OR2J3O76001 311 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 RPLP1P05386 114 aaKnown RBP10.8□□□□□ -0.68
SYNPO-202ENST00000394243 F2RP25116 425 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 RNASEKQ6P5S7 137 aaKnown RBP10.8□□□□□ -0.68
SYNPO-202ENST00000394243 DOK3Q7L591 496 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 OLIG1Q8TAK6 271 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 GPX8Q8TED1 209 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 HLA-CQ95604 372 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 PTRH2Q9Y3E5 179 aaKnown RBP10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SLCO1B1Q9Y6L6 691 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CAMTA1Q9Y6Y1 1673 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 PRSS38A1L453 326 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CLDN34H7C241 214 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CSNK1DP48730 415 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SLC48A1Q6P1K1 146 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 DHRS11Q6UWP2 260 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SLC35E1Q96K37 410 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 BARHL1Q9BZE3 327 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CYSLTR2Q9NS75 346 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 WNT1P04628 370 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 LBHQ53QV2 105 aaPredicted RBP10.8□□□□□ -0.68
SYNPO-202ENST00000394243 MAMSTRQ6ZN01 415 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 GJC3Q8NFK1 279 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 SUSD2Q9UGT4 822 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 TMEM184BQ9Y519 407 aaPredicted RBP10.8□□□□□ -0.68
SYNPO-202ENST00000394243 TEX50A0A1B0GTY4 177 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 MBTPS2O43462 519 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 GLSO94925 669 aaPredicted RBP10.8□□□□□ -0.68
SYNPO-202ENST00000394243 FOLR3P41439 243 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CBLN2Q8IUK8 224 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 HGDQ93099 445 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 PHYHIPLQ96FC7 376 aa10.8□□□□□ -0.68
SYNPO-202ENST00000394243 CST7O76096 145 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 RPL27P61353 136 aaKnown RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 PLXDC2Q6UX71 529 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 M1APQ8TC57 530 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 CRYGNQ8WXF5 182 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 CAPNS2Q96L46 248 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ADGRL4Q9HBW9 690 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 WSB1Q9Y6I7 421 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ARG1P05089 322 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 B2MP61769 119 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 DEFB133Q30KQ1 61 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 AGBL4Q5VU57 503 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 DGAT2L6Q6ZPD8 337 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ETFBKMTQ8IXQ9 262 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 TCEAL8Q8IYN2 117 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 TMEM229BQ8NBD8 167 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ST6GAL2Q96JF0 529 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 FGF20Q9NP95 211 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 NAV1Q8NEY1 1877 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 SPINK4O60575 86 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 CTXN2P0C2S0 81 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 CSN1S1P47710 185 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ASCL1P50553 236 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 PRAMEF20Q5VT98 475 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ARFGEF2Q9Y6D5 1785 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 NSG1A0A0A6YYJ2 146 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 KIAA1324LA8MWY0 1029 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 H3BP45 60 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 TCF21O43680 179 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ACAA1P09110 424 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 HNRNPA1P09651 372 aaKnown RBP eCLIP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 SULT1A3P0DMM9 295 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 SULT1A4P0DMN0 295 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 DUSP5Q16690 384 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ISOC2Q96AB3 205 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 SLC22A12Q96S37 553 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 RIMS4Q9H426 269 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 SLC45A1Q9Y2W3 748 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF98A6NK75 572 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 PLPP1O14494 284 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 WDR1O75083 606 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 GRPP07492 148 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 OR5G3P0C626 314 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms