RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 INTS12Q96CB8 462 aaKnown RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 OXGR1Q96P68 337 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 USB1Q9BQ65 265 aaKnown RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 KCNJ16Q9NPI9 418 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 JKAMPQ9P055 326 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 FRRS1LQ9P0K9 344 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 AK6Q9Y3D8 172 aaKnown RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 DNAJC13O75165 2243 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 IGLV1-36A0A0B4J1U3 117 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 ANKRD61A6NGH8 418 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 NPIPB13A6NJU9 1138 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 ACOD1A6NK06 481 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 NPIPB4C9JG80 1138 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 PDCD5O14737 125 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 PIN1P1O15428 100 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 ZG16O60844 167 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 TNFSF13O75888 250 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 PSKH1P11801 424 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 CTLA4P16410 223 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 INPP1P49441 399 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 P2RY4P51582 365 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 MELKQ14680 651 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 C1QTNF12Q5T7M4 302 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 OR5AK2Q8NH90 309 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 ENKURQ8TC29 256 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 ABHD3Q8WU67 409 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 THEM6Q8WUY1 208 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 DERL3Q96Q80 235 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 KCNJ15Q99712 375 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 MMP28Q9H239 520 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 KCNG2Q9UJ96 466 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 SVILO95425 2214 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 NBASA2RRP1 2371 aa8.98□□□□□ -0.97
VPS53-202ENST00000389040 A6NIZ1 184 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 MS4A18H0YCH9 400 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ZNF593O00488 134 aaPredicted RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 HLA-DOBP13765 273 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ZNF43P17038 809 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 MAPK3P27361 379 aaPredicted RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 AGTR1P30556 359 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 MAP2K3P46734 347 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 DAP3P51398 398 aaKnown RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 RAP1BP61224 184 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 RAP1AP62834 184 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 SRSF1Q07955 248 aaKnown RBP eCLIP8.97□□□□□ -0.977e-9■■□□□ 13.7
VPS53-202ENST00000389040 MS4A18Q3C1V0 323 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 Q499Y3 187 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 SLC18B1Q6NT16 456 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ZNF544Q6NX49 715 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 MZT2BQ6NZ67 158 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 BEND4Q6ZU67 534 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 HDDC2Q7Z4H3 204 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 RDH10Q8IZV5 341 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 UBE2J2Q8N2K1 259 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 KDM8Q8N371 416 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 NAXEQ8NCW5 288 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 OR5H6Q8NGV6 325 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ASB10Q8WXI3 467 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ASB17Q8WXJ9 295 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 NSMAFQ92636 917 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 STARD4Q96DR4 205 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 FOXN4Q96NZ1 517 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 AMELYQ99218 206 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 WACQ9BTA9 647 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 BRD7Q9NPI1 651 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 RBFOX1Q9NWB1 397 aaKnown RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 MRPL22Q9NWU5 206 aaKnown RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 SLCO1C1Q9NYB5 712 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ELOVL5Q9NYP7 299 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ING1Q9UK53 422 aaPredicted RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 RCE1Q9Y256 329 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 RELNP78509 3460 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 GTF3C1Q12789 2109 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 A0A0B4J203 849 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 TMEM212A6NML5 194 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 OR4C45A6NMZ5 311 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 A8MXE2 369 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 LYRM1O43325 122 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ZNF432O94892 652 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 CGAP01215 116 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 SPARCP09486 303 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 SNRPBP14678 240 aaKnown RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 IFNGR1P15260 489 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 BMP5P22003 454 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 CRABP1P29762 137 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 KIR2DL3P43628 341 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ASCL1P50553 236 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ADAM8P78325 824 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 GLO1Q04760 184 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 PYHIN1Q6K0P9 492 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 CREB3L2Q70SY1 520 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 SSX8Q7RTT4 187 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 TUSC5Q8IXB3 177 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 DTX3Q8N9I9 347 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 OR9K2Q8NGE7 335 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 OR2G2Q8NGZ5 317 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ORAI1Q96D31 301 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 ZC3HAV1LQ96H79 300 aaKnown RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 OR8B4Q96RC9 309 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 COMMD4Q9H0A8 199 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms