RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 EIF3KQ9UBQ5 218 aaKnown RBP19.15■□□□□ 0.66
SDC3-202ENST00000339394 A0A1W2PPR1 153 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 ICMTO60725 284 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 SULT1C4O75897 302 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 NGFP01138 241 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 KRT8P05787 483 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 FAM157BP0CG42 384 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 RIDAP52758 137 aaKnown RBP19.14■□□□□ 0.65
SDC3-202ENST00000339394 CDONQ4KMG0 1287 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 ARL9Q6T311 187 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 DRAM2Q6UX65 266 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 IPCEF1Q8WWN9 437 aaPredicted RBP19.14■□□□□ 0.65
SDC3-202ENST00000339394 MYDGFQ969H8 173 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 OR51B6Q9H340 312 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 NIPAL2Q9H841 368 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 CLEC2DQ9UHP7 191 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 POU2F3Q9UKI9 436 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 BLOC1S6Q9UL45 172 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 LRCH1Q9Y2L9 728 aa19.14■□□□□ 0.65
SDC3-202ENST00000339394 EXOSC1Q9Y3B2 195 aaKnown RBP19.14■□□□□ 0.65
SDC3-202ENST00000339394 CELSR2Q9HCU4 2923 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 CADP27708 2225 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 RTTNQ86VV8 2226 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 METTL15A6NJ78 407 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 CDK1P06493 297 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 MYL12AP19105 171 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 SLC6A9P48067 706 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 CX3CR1P49238 355 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 OR12D2P58182 307 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 TP53I3Q53FA7 332 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 ZNF704Q6ZNC4 412 aaPredicted RBP19.13■□□□□ 0.65
SDC3-202ENST00000339394 PLEKHG7Q6ZR37 379 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 ZNF283Q8N7M2 679 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 LILRB1Q8NHL6 650 aaPredicted RBP19.13■□□□□ 0.65
SDC3-202ENST00000339394 NEUROG1Q92886 237 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 DOK1Q99704 481 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 TBCCD1Q9NVR7 557 aa19.13■□□□□ 0.65
SDC3-202ENST00000339394 PTPN13Q12923 2485 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 SMPD2O60906 423 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 SLC2A1P11166 492 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 DCTDP32321 178 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 RAD52P43351 418 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 ACTA2P62736 377 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 ACTG2P63267 376 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 NKX6-1P78426 367 aaPredicted RBP19.12■□□□□ 0.65
SDC3-202ENST00000339394 LIPNQ5VXI9 398 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 COLCA1Q6ZS62 124 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 KCTD20Q7Z5Y7 419 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 YIPF7Q8N8F6 280 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 NUP37Q8NFH4 326 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 ABHD4Q8TB40 342 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 MARVELD3Q96A59 401 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 C4orf36Q96KX1 117 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 C1QTNF5Q9BXJ0 243 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 YTHDF1Q9BYJ9 559 aaKnown RBP19.12■□□□□ 0.65
SDC3-202ENST00000339394 ISG20L2Q9H9L3 353 aaKnown RBP19.12■□□□□ 0.65
SDC3-202ENST00000339394 CHCHD3Q9NX63 227 aaKnown RBP19.12■□□□□ 0.65
SDC3-202ENST00000339394 ERVK-18Q9QC07 812 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 GNG8Q9UK08 70 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 SPEF1Q9Y4P9 236 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 ATP23Q9Y6H3 246 aa19.12■□□□□ 0.65
SDC3-202ENST00000339394 APOC1P02654 83 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 LCATP04180 440 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 RGS6P49758 472 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 ZNF121P58317 390 aaPredicted RBP19.11■□□□□ 0.65
SDC3-202ENST00000339394 SNTB2Q13425 540 aaKnown RBP19.11■□□□□ 0.65
SDC3-202ENST00000339394 ZNF787Q6DD87 383 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 RFPL4BQ6ZWI9 263 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 C14orf79Q96F83 325 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 MRPL48Q96GC5 212 aaKnown RBP19.11■□□□□ 0.65
SDC3-202ENST00000339394 MYCBPQ99417 103 aaPredicted RBP19.11■□□□□ 0.65
SDC3-202ENST00000339394 CLEC4MQ9H2X3 399 aaPredicted RBP19.11■□□□□ 0.65
SDC3-202ENST00000339394 BRD7Q9NPI1 651 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 CA10Q9NS85 328 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 ACOXLQ9NUZ1 547 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 N6AMT1Q9Y5N5 214 aa19.11■□□□□ 0.65
SDC3-202ENST00000339394 TMEM269A0A1B0GVZ9 245 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 J3QLW9 94 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 RPP14O95059 124 aaKnown RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 TACSTD2P09758 323 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 ZNF19P17023 458 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 ANOS1P23352 680 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 EEF1B2P24534 225 aaKnown RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 PSMA6P60900 246 aaKnown RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 TLE4Q04727 773 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 ZNF672Q499Z4 452 aaPredicted RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 UNQ6126/PRO20091Q6UXV3 157 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 PRSS45Q7RTY3 260 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 FAM220AQ7Z4H9 259 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 AKAP1Q92667 903 aaKnown RBP eCLIP19.1■□□□□ 0.652e-7■■■■□ 21.9
SDC3-202ENST00000339394 APOBEC3DQ96AK3 386 aaPredicted RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 SIGLEC11Q96RL6 698 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 BCL2L14Q9BZR8 327 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 STARD10Q9Y365 291 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 E7EQL1 145 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 RGS10O43665 173 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 GPRIN2O60269 458 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 ANXA2P07355 339 aaKnown RBP19.1■□□□□ 0.65
SDC3-202ENST00000339394 GLRXP35754 106 aa19.1■□□□□ 0.65
SDC3-202ENST00000339394 MMP16P51512 607 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms