RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ORC6Q9Y5N6 252 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 ZAR1LA6NP61 321 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 TIMM8AO60220 97 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-201ENST00000332345 LCATP04180 440 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 ACSM4P0C7M7 580 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 RAC2P15153 192 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 RPS7P62081 194 aaKnown RBP11.97□□□□□ -0.49
LIMS1-201ENST00000332345 PPP2R2BQ00005 443 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 MALLQ13021 153 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 EIF2B1Q14232 305 aaKnown RBP11.97□□□□□ -0.49
LIMS1-201ENST00000332345 SLX4IPQ5VYV7 408 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 CLEC9AQ6UXN8 241 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 COLCA1Q6ZS62 124 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 RHOUQ7L0Q8 258 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 DPY19L4Q7Z388 723 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 TIGD4Q8IY51 512 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 OR6N2Q8NGY6 317 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 RDH5Q92781 318 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 STMN2Q93045 179 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 SLAMF6Q96DU3 332 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 ZMYND19Q96E35 227 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-201ENST00000332345 DIRC2Q96SL1 478 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 TEAD3Q99594 435 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 COPS4Q9BT78 406 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 DECR2Q9NUI1 292 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 DDX28Q9NUL7 540 aaKnown RBP11.97□□□□□ -0.49
LIMS1-201ENST00000332345 TMEFF2Q9UIK5 374 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-201ENST00000332345 ZDHHC8Q9ULC8 765 aa11.97□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF878C9JN71 531 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 M0R135 149 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 TPD52L2O43399 206 aaKnown RBP11.96□□□□□ -0.49
LIMS1-201ENST00000332345 TLX2O43763 284 aaPredicted RBP11.96□□□□□ -0.49
LIMS1-201ENST00000332345 KITLGP21583 273 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 MMP15P51511 669 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 GRB2P62993 217 aaKnown RBP11.96□□□□□ -0.49
LIMS1-201ENST00000332345 CCL8P80075 99 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 MRPS11P82912 194 aaKnown RBP11.96□□□□□ -0.49
LIMS1-201ENST00000332345 APOFQ13790 326 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 FAM209AQ5JX71 171 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 DRAM2Q6UX65 266 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 FBXW12Q6X9E4 464 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 TCEANCQ8N8B7 351 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF454Q8N9F8 522 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 OR10S1Q8NGN2 331 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF799Q96GE5 643 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 KCNJ15Q99712 375 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 EGLN1Q9GZT9 426 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 POFUT1Q9H488 388 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 TOR3AQ9H497 397 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 SP140LQ9H930 580 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 PTTG3PQ9NZH4 202 aa11.96□□□□□ -0.49
LIMS1-201ENST00000332345 PURGQ9UJV8 347 aaKnown RBP11.96□□□□□ -0.49
LIMS1-201ENST00000332345 SPRY3O43610 288 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 PRKYO43930 277 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 APOC1P02654 83 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 HPXP02790 462 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 ALPLP05186 524 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 SELEP16581 610 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 USF1P22415 310 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-201ENST00000332345 SLC2A5P22732 501 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 GIFP27352 417 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 EPHA2P29317 976 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 OTX1P32242 354 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-201ENST00000332345 NR4A2P43354 598 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 MAGEB1P43366 347 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 SLC6A9P48067 706 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 RAD23AP54725 363 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 TMEM33P57088 247 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 EFNB1P98172 346 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 LOXL1Q08397 574 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-201ENST00000332345 LCN1P1Q5VSP4 162 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 C12orf73Q69YU5 71 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 NAA40Q86UY6 237 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-201ENST00000332345 BBS1Q8NFJ9 593 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 TMEM163Q8TC26 289 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 ST7LQ8TDW4 575 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 THEM6Q8WUY1 208 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 SMR3AQ99954 134 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 C9orf16Q9BUW7 83 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 ABHD6Q9BV23 337 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 GABARAPL3Q9BY60 117 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 RIBC2Q9H4K1 309 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 GSX1Q9H4S2 264 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-201ENST00000332345 CHODLQ9H9P2 273 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 USE1Q9NZ43 259 aa11.95□□□□□ -0.5
LIMS1-201ENST00000332345 VWC2LB2RUY7 222 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 BAG2O95816 211 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 LY6G6DO95868 133 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 IGHV1-46P01743 117 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 LYNP07948 512 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 ADH4P08319 380 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 PSKH1P11801 424 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 TNFSF4P23510 183 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 COL8A2P25067 703 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 HSD11B1P28845 292 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 POLR2IP36954 125 aaKnown RBP11.94□□□□□ -0.5
LIMS1-201ENST00000332345 ALDH3A2P51648 485 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 PRKXP51817 358 aa11.94□□□□□ -0.5
LIMS1-201ENST00000332345 HLXQ14774 488 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms