RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 UBALD1Q8TB05 177 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 HAS2Q92819 552 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 GPR62Q9BZJ7 368 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 TMPRSS5Q9H3S3 457 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 THADAQ6YHU6 1953 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 RFPL4AA6NLU0 287 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 RFPL4AL1F8VTS6 287 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CCL5P13501 91 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 GABRA1P14867 456 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CTHP32929 405 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 MMP16P51512 607 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ARSJQ5FYB0 599 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 C18orf63Q68DL7 685 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CLDND1Q9NY35 253 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 RHCGQ9UBD6 479 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 GOSR2O14653 212 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 NKX2-1P43699 371 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 GPR12P47775 334 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OR1E2P47887 323 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 PFN3P60673 137 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OPCMLQ14982 345 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SSX7Q7RTT5 188 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 PIK3IP1Q96FE7 263 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 NKX2-4Q9H2Z4 354 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CHST11Q9NPF2 352 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 NKX6-3A6NJ46 265 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ADAM11O75078 769 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SOX3P41225 446 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 FABP9Q0Z7S8 132 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 TAS1R1Q7RTX1 841 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 BAP18Q8IXM2 172 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OR51Q1Q8NH59 317 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ERGIC1Q969X5 290 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 TEAD3Q99594 435 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 TRAPPC6AO75865 159 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SOD1P00441 154 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 PTNP21246 168 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CDKN1CP49918 316 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 TPMTP51580 245 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SRSF7Q16629 238 aaKnown RBP eCLIP3.66□□□□□ -1.82
USH2A-201ENST00000307340 CPOQ8IVL8 374 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 FBXW5Q969U6 566 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 PPIL3Q9H2H8 161 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 ACER3Q9NUN7 267 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 TAS2R16Q9NYV7 291 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SERGEFQ9UGK8 458 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SERTM2A0A1B0GWG4 89 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 NKX2-5P52952 324 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 UCNP55089 124 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CASP9P55211 416 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 C19orf57Q0VDD7 668 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SLC22A6Q4U2R8 563 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 GABRG1Q8N1C3 465 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 BAHD1Q8TBE0 780 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 PCDHGA9Q9Y5G4 932 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 SOX21Q9Y651 276 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 EIF4E1BA6NMX2 242 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 MT-ND4P03905 459 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SRFP11831 508 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 IL2RGP31785 369 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 RIPPLY2Q5TAB7 128 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 Q6ZNB5 142 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OR52I1Q8NGK6 324 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OR10K1Q8NGX5 313 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 MRPL38Q96DV4 380 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 MYOZ1Q9NP98 299 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 COL11A2P13942 1736 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 A0A1B0GW15 77 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 NPPBP16860 134 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 MSX2P35548 267 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 SPCS3P61009 180 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 HSF1Q00613 529 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ACAD8Q9UKU7 415 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 CEP192Q8TEP8 1941 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SIX6O95475 246 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ZNF888P0CJ79 500 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 GABRA2P47869 451 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 PCBP3P57721 371 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 TOMM20LQ6UXN7 152 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SLC36A1Q7Z2H8 476 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OR1L1Q8NH94 360 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ARRDC2Q8TBH0 407 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 SLCO1C1Q9NYB5 712 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 OR5AC2Q9NZP5 309 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 DOCK8Q8NF50 2099 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 H3BQ06 376 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 TERTO14746 1132 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 TNFSF14O43557 240 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 KNG1P01042 644 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 GGTLC2Q14390 218 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 LYSMD4Q5XG99 296 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 MED25Q71SY5 747 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 GTF3AQ92664 365 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 COL25A1Q9BXS0 654 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 HSF4Q9ULV5 492 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 TNRC6AQ8NDV7 1962 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 A0A1B0GU03 582 aa3.66□□□□□ -1.82
USH2A-201ENST00000307340 ZNF207O43670 478 aaKnown RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 CTSDP07339 412 aaPredicted RBP3.66□□□□□ -1.82
USH2A-201ENST00000307340 ALDOCP09972 364 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms