RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 HCAR1Q9BXC0 346 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 CCDC134Q9H6E4 229 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 SAMD4AQ9UPU9 718 aaKnown RBP10.71□□□□□ -0.69
CD44-203ENST00000278386 LHFPL6Q9Y693 200 aa10.71□□□□□ -0.69
CD44-203ENST00000278386 IQCF6A8MYZ5 107 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 F5H5P2 479 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 MLNRO43193 412 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 WIPF1O43516 503 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 IRF2P14316 349 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 SELEP16581 610 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 PRSS12P56730 875 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 PSME3P61289 254 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 SEC23BQ15437 767 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 KCNMB1Q16558 191 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 HSP90B2PQ58FF3 399 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 GLYATQ6IB77 296 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 NLRC3Q7RTR2 1065 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 KLBQ86Z14 1044 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 LINC00346Q8IVM7 164 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 OR8B3Q8NGG8 313 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 SLC25A28Q96A46 364 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 NEIL1Q96FI4 390 aaPredicted RBP10.7□□□□□ -0.7
CD44-203ENST00000278386 PLEKHA8Q96JA3 519 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 ZNF48Q96MX3 618 aaPredicted RBP10.7□□□□□ -0.7
CD44-203ENST00000278386 OR8B2Q96RD0 313 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 ADA2Q9NZK5 511 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 NDUFAF4Q9P032 175 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 ABCD2Q9UBJ2 740 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 MIOXQ9UGB7 285 aa10.7□□□□□ -0.7
CD44-203ENST00000278386 IGLV1-36A0A0B4J1U3 117 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 IGHV2-70DA0A0C4DH43 119 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 F5H5K5 113 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 DCTN6O00399 190 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 TXNDC12O95881 172 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 HLA-DQA2P01906 255 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 WNT2P09544 360 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 IGHV4-38-2P0DP08 117 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 FPR3P25089 353 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 NOS3P29474 1203 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 SLC6A6P31641 620 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 MTNR1AP48039 350 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 FAM201AQ5SY85 155 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 SHISA2Q6UWI4 295 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 LRRN1Q6UXK5 716 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 CFAP77Q6ZQR2 320 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 RNF148Q8N7C7 305 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 FAM86B1Q8N7N1 296 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 OR2AJ1Q8NGZ0 328 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 NMNAT3Q96T66 252 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 PITX2Q99697 317 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 SLC30A2Q9BRI3 323 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 TMEM246Q9BRR3 403 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 ZNF747Q9BV97 191 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 IFT27Q9BW83 186 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 CDADC1Q9BWV3 514 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 OR52D1Q9H346 318 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 FN3KQ9H479 309 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 SRA1Q9HD15 236 aaKnown RBP10.69□□□□□ -0.7
CD44-203ENST00000278386 SPAG4Q9NPE6 437 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 RPRD1BQ9NQG5 326 aaKnown RBP10.69□□□□□ -0.7
CD44-203ENST00000278386 TMEM100Q9NV29 134 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 B9D1Q9UPM9 204 aa10.69□□□□□ -0.7
CD44-203ENST00000278386 TMPRSS2O15393 492 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 OR10H3O60404 316 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 GADD45GO95257 159 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 HLA-DPB1P04440 258 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 RNASE1P07998 156 aaKnown RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 HIST1H1CP16403 213 aaKnown RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 CD80P33681 288 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 MDH1P40925 334 aaKnown RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 PITPNBP48739 271 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 HIST1H3AP68431 136 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 PAX8Q06710 450 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 DBPQ10586 325 aaPredicted RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 COX10Q12887 443 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 MALLQ13021 153 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 ZNF404Q494X3 552 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 SLC36A3Q495N2 470 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 HIST2H3PS2Q5TEC6 136 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 SLC18B1Q6NT16 456 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 HIST2H3AQ71DI3 136 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 MRPL21Q7Z2W9 205 aaKnown RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 SDR9C7Q8NEX9 313 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 SLC26A10Q8NG04 563 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 OR11L1Q8NGX0 322 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 OR4K13Q8NH42 304 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 CMTM5Q96DZ9 223 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 C7orf34Q96L11 122 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 DHRS1Q96LJ7 313 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 C1orf147Q96MC9 270 aaPredicted RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 ATF6BQ99941 703 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 UNKLQ9H9P5 680 aaKnown RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 TMEM165Q9HC07 324 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 DCAF13Q9NV06 445 aaKnown RBP10.68□□□□□ -0.7
CD44-203ENST00000278386 CLN8Q9UBY8 286 aa10.68□□□□□ -0.7
CD44-203ENST00000278386 TRRAPQ9Y4A5 3859 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 MDFIC2A0A1B0GVS7 189 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 LCATP04180 440 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 ACSM4P0C7M7 580 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 CPT2P23786 658 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms