RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ARFGEF1Q9Y6D6 1849 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR51F1A6NGY5 319 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR4C45A6NMZ5 311 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLITRK3O94933 977 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OPN1MWP04001 364 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OPN1MW2P0DN77 364 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OPN1MW3P0DN78 364 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CD1DP15813 335 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TPSB2P20231 275 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 FGF7P21781 194 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CDKN2DP55273 166 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TAS2R19P59542 299 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 POU6F2P78424 691 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 PPP1R8Q12972 351 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 TPSAB1Q15661 275 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRAMEF6Q5VXH4 476 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRR27Q6MZM9 219 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SEZ6L2Q6UXD5 910 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TAC4Q86UU9 113 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 DCTN5Q9BTE1 182 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRR14Q9BWN1 585 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 WNT16Q9UBV4 365 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF443Q9Y2A4 671 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 RAI2Q9Y5P3 530 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PSME4Q14997 1843 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 E5RJQ4 531 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 M0R1X1 148 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SS18L1O75177 396 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 CBR3O75828 277 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LHBP01229 141 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PDGFAP04085 211 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 RAB40ALP0C0E4 278 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 GPR3P46089 330 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF133P52736 654 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 SCGB1D4Q6XE38 83 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF620Q6ZNG0 422 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 BPIFCQ8NFQ6 507 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR1K1Q8NGR3 316 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR13F1Q8NGS4 319 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 BADQ92934 168 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF714Q96N38 554 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TAAR1Q96RJ0 339 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PSMG3Q9BT73 122 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 PLA2G12BQ9BX93 195 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 GAL3ST2Q9H3Q3 398 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 METTL17Q9H7H0 456 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 VWA7Q9Y334 891 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LRRC37A3O60309 1634 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LACTBL1A8MY62 500 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C21orf140B9A014 251 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C9JVG2 144 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 H3BVH4 76 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 IGHG1P01857 330 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 IL13RA1P78552 427 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 MFGE8Q08431 387 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 IL11RAQ14626 422 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC9A3R2Q15599 337 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TECRLQ5HYJ1 363 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 EBLN2Q6P2I7 272 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C12orf54Q6X4T0 127 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 DOLPP1Q86YN1 238 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SYT8Q8NBV8 401 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR5AR1Q8NGP9 310 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR13C4Q8NGS5 318 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 VSTM2AQ8TAG5 236 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C1orf74Q96LT6 269 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CITED2Q99967 270 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 SEC22CQ9BRL7 303 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRO1933Q9H354 126 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C1GALT1Q9NS00 363 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TRAPPC2LQ9UL33 140 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ROBO3Q96MS0 1386 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TRBC2A0A5B9 178 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PPP5D1E7EU14 171 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TNFSF14O43557 240 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 RAD1O60671 282 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TBX19O60806 448 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TNFRSF6BO95407 300 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SPI1P17947 270 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LIMS1P48059 325 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ATP5IP56385 69 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 PKIAP61925 76 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TMEM115Q12893 351 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC35G1Q2M3R5 365 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF260Q3ZCT1 412 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR4A47Q6IF82 309 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 CALHM3Q86XJ0 350 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 VRK2Q86Y07 508 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRR18Q8N4B5 295 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR1N1Q8NGS0 311 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR14A16Q8NHC5 309 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ADAMTS19Q8TE59 1207 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PRRC1Q96M27 445 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 PIP5K1AQ99755 562 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ULBP2Q9BZM5 246 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SAP30LQ9HAJ7 183 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OLAHQ9NV23 265 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OSER1Q9NX31 292 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR1A1Q9P1Q5 309 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SNX11Q9Y5W9 270 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms