RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OR8J2Q8NGG1 315 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 NRSN2Q9GZP1 204 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 LOC285095A0A1B0GVY8 99 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 F5H697 171 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 LINC01565O15544 149 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 HPP00738 406 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 HRASP01112 189 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 NME1P15531 152 aaKnown RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 DPTQ07507 201 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 ACSM1Q08AH1 577 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 FAM162BQ5T6X4 162 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM64Q6YI46 380 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 IDO2Q6ZQW0 420 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SYT9Q86SS6 491 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 ISCA2Q86U28 154 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PGBD5Q8N414 524 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PCNPQ8WW12 178 aaKnown RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SLC7A6Q92536 515 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 TTC9Q92623 222 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SPACA9Q96E40 222 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PHOX2BQ99453 314 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 DDX31Q9H8H2 851 aaKnown RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CSNK1G1Q9HCP0 422 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PTGDR2Q9Y5Y4 395 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 DOCK3Q8IZD9 2030 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM72A0PK05 275 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 M0R135 149 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SOCS6O14544 535 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CDC14BO60729 498 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 TNFRSF1BP20333 461 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 GGTA1PQ4G0N0 100 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 NUFIP2Q7Z417 695 aaKnown RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 LRRC28Q86X40 367 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR2M3Q8NG83 312 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 BAHD1Q8TBE0 780 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF799Q96GE5 643 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 LAT2Q9GZY6 243 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 TBC1D29Q9UFV1 150 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CYR61O00622 381 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 HOXD4P09016 255 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR4A8P0C604 315 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF85Q03923 595 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PMPCAQ10713 525 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 FAM71CQ8NEG0 241 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR4F17Q8NGA8 305 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR4F5Q8NH21 305 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR1L1Q8NH94 360 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR4F4Q96R69 305 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 MS4A5Q9H3V2 200 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SLC35D1Q9NTN3 355 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 hADV38S2A0JD32 116 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 H0YIV9 168 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 K7ESM1 405 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 TCAPO15273 167 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 MBP02144 154 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 INSM1Q01101 510 aaPredicted RBP5.59□□□□□ -1.52
SCN1A-217ENST00000637988 ILKQ13418 452 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 IGFBP7Q16270 282 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF789Q5FWF6 425 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 ADAM5Q6NVV9 412 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 TIPARPQ7Z3E1 657 aaKnown RBP5.59□□□□□ -1.52
SCN1A-217ENST00000637988 LOXL4Q96JB6 756 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 LYSMD1Q96S90 227 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 SMIM3Q9BZL3 60 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 TUBA4BQ9H853 241 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 HINT3Q9NQE9 182 aaKnown RBP5.59□□□□□ -1.52
SCN1A-217ENST00000637988 NAGKQ9UJ70 344 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 SLC17A4Q9Y2C5 497 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 MYO5AQ9Y4I1 1855 aaKnown RBP5.59□□□□□ -1.52
SCN1A-217ENST00000637988 CEPT1Q9Y6K0 416 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 SLCO1B1Q9Y6L6 691 aa5.59□□□□□ -1.52
SCN1A-217ENST00000637988 P2RY10O00398 339 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 GABRPO00591 440 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 FADS1O60427 444 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 EPHA8P29322 1005 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 BATFQ16520 125 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ACOT6Q3I5F7 207 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF385BQ569K4 471 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM236Q5W0B7 351 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PLAG1Q6DJT9 500 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 BAGE3Q86Y29 109 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 BAGE2Q86Y30 109 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OR13C9Q8NGT0 318 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 DPH3P1Q9H4G8 78 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 RAB18Q9NP72 206 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 COA4Q9NYJ1 87 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OR7A17O14581 309 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF26P17031 533 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 Q1RN00 199 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 STPG1Q5TH74 334 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SLC48A1Q6P1K1 146 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 FAM122CQ6P4D5 195 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 NHLRC1Q6VVB1 395 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ADGRE4PQ86SQ3 457 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 DYNC2LI1Q8TCX1 351 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PIGTQ969N2 578 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SLCO4A1Q96BD0 722 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF300Q96RE9 604 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 NOX4Q9NPH5 578 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms