RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TMEM5Q9Y2B1 443 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 ENPP4Q9Y6X5 453 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 NOTCH3Q9UM47 2321 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 DOCK11Q5JSL3 2073 aa13.67□□□□□ -0.22
CLN3-264ENST00000637985 F5H0A9 414 aaPredicted RBP13.66□□□□□ -0.22
CLN3-264ENST00000637985 AHCYL1O43865 530 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 CST2P09228 141 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 CSF1P09603 554 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 DRD4P21917 467 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 MMP15P51511 669 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 PCBD1P61457 104 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 PSG4Q00888 419 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 HNRNPA0Q13151 305 aaKnown RBP13.66□□□□□ -0.22
CLN3-264ENST00000637985 ZBED5Q49AG3 693 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 TBPL2Q6SJ96 375 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 BRD3OSQ6XYD6 125 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 C1orf174Q8IYL3 243 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 ALDH16A1Q8IZ83 802 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 OR13C2Q8NGS9 318 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 POM121L2Q96KW2 1035 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 WACQ9BTA9 647 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 EGLN1Q9GZT9 426 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 NSRP1Q9H0G5 558 aaKnown RBP13.66□□□□□ -0.22
CLN3-264ENST00000637985 EIF3KQ9UBQ5 218 aaKnown RBP13.66□□□□□ -0.22
CLN3-264ENST00000637985 GRHPRQ9UBQ7 328 aa13.66□□□□□ -0.22
CLN3-264ENST00000637985 SAMD4AQ9UPU9 718 aaKnown RBP13.66□□□□□ -0.22
CLN3-264ENST00000637985 FAM32AQ9Y421 112 aaKnown RBP13.66□□□□□ -0.22
CLN3-264ENST00000637985 A0A1W2PRQ8 180 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 CDC42EP2O14613 210 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 SNX3O60493 162 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 GMNNO75496 209 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 OPN1MWP04001 364 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 H1F0P07305 194 aaKnown RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 ADH4P08319 380 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 CD14P08571 375 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 OPN1MW2P0DN77 364 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 OPN1MW3P0DN78 364 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 NCK1P16333 377 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 RHCEP18577 417 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 CCNOP22674 350 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 RPL4P36578 427 aaKnown RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 GPR4P46093 362 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 GDI2P50395 445 aaKnown RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 DGCR6Q14129 220 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 SPRNQ5BIV9 151 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 GLYATQ6IB77 296 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 LRRN1Q6UXK5 716 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 TSEN54Q7Z6J9 526 aaKnown RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 SYT9Q86SS6 491 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 LRRC28Q86X40 367 aaPredicted RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 CLDN22Q8N7P3 220 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 OR1J1Q8NGS3 322 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 SLC7A13Q8TCU3 470 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 DCLRE1CQ96SD1 692 aaKnown RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 DCAF13Q9NV06 445 aaKnown RBP13.65□□□□□ -0.22
CLN3-264ENST00000637985 TIMM10BQ9Y5J6 103 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 POMT1Q9Y6A1 747 aa13.65□□□□□ -0.22
CLN3-264ENST00000637985 C5orf49A4QMS7 147 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 MELTFP08582 738 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 MSR1P21757 451 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 LAP3P28838 519 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 ERVK-25P63136 954 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 ZNF718Q3SXZ3 478 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 ESCO2Q56NI9 601 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 TMEM255AQ5JRV8 349 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 RUSC1-AS1Q66K80 236 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 CPLX4Q7Z7G2 160 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 ICA1LQ8NDH6 482 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 DYRK2Q92630 601 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 DACT3Q96B18 629 aaPredicted RBP13.64□□□□□ -0.23
CLN3-264ENST00000637985 FAM71F1Q96KD3 344 aaPredicted RBP13.64□□□□□ -0.23
CLN3-264ENST00000637985 C7orf34Q96L11 122 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 OR2H1Q9GZK4 316 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 GORASP2Q9H8Y8 452 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 ADA2Q9NZK5 511 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 NDUFAF4Q9P032 175 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 BIRC6Q9NR09 4857 aa13.64□□□□□ -0.23
CLN3-264ENST00000637985 TET2Q6N021 2002 aaPredicted RBP13.63□□□□□ -0.23
CLN3-264ENST00000637985 LOC100509620A0A075B734 347 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 A0A1W2PPL8 197 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 ZSCAN5BA6NJL1 495 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 C12orf71A8MTZ7 269 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 XKRYO14609 159 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 ICMTO60725 284 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 BPIFB3P59826 476 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 BTNL3Q6UXE8 466 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 FAM122BQ7Z309 247 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 AKR7LQ8NHP1 331 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 PPP1R14AQ96A00 147 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 Q96M85 177 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 FAM107BQ9H098 131 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 WNT5BQ9H1J7 359 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 RASSF4Q9H2L5 321 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 KRCC1Q9NPI7 259 aaPredicted RBP13.63□□□□□ -0.23
CLN3-264ENST00000637985 POLE4Q9NR33 117 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 TMEM106BQ9NUM4 274 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 ADAM18Q9Y3Q7 739 aa13.63□□□□□ -0.23
CLN3-264ENST00000637985 IGHV2-70DA0A0C4DH43 119 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 PLSCR5A0PG75 271 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 PRSS37A4D1T9 235 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms