RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DCTN6O00399 190 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 MPZL1O95297 269 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 NGFP01138 241 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 CDK5Q00535 292 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 AQP6Q13520 282 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 ZNF718Q3SXZ3 478 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 ZNF362Q5T0B9 420 aaPredicted RBP16.43■□□□□ 0.22
CLN3-260ENST00000637578 RFPL4BQ6ZWI9 263 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 NPEPL1Q8NDH3 523 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 HPS1Q92902 700 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 MSI2Q96DH6 328 aaKnown RBP16.43■□□□□ 0.22
CLN3-260ENST00000637578 C4orf45Q96LM5 186 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 CHODLQ9H9P2 273 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 SLC25A19Q9HC21 320 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 H3BSA7 217 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 SGCEO43556 437 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 ACHEP22303 614 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 PEX2P28328 305 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 CRABP1P29762 137 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 GRK5P34947 590 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 POLR2IP36954 125 aaKnown RBP16.42■□□□□ 0.22
CLN3-260ENST00000637578 DBPQ10586 325 aaPredicted RBP16.42■□□□□ 0.22
CLN3-260ENST00000637578 PTGES3Q15185 160 aaKnown RBP16.42■□□□□ 0.22
CLN3-260ENST00000637578 PCGF3Q3KNV8 242 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 ALKBH6Q3KRA9 238 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 VASH1Q7L8A9 365 aaPredicted RBP16.42■□□□□ 0.22
CLN3-260ENST00000637578 CYB561A3Q8NBI2 242 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 SLC25A40Q8TBP6 338 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 KLF14Q8TD94 323 aaPredicted RBP16.42■□□□□ 0.22
CLN3-260ENST00000637578 TSSK2Q96PF2 358 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 GABARAPL3Q9BY60 117 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 OR2J1Q9GZK6 312 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 RIBC2Q9H4K1 309 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 ELOVL3Q9HB03 270 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 TBCCD1Q9NVR7 557 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 ENOPH1Q9UHY7 261 aa16.42■□□□□ 0.22
CLN3-260ENST00000637578 IGLV1-36A0A0B4J1U3 117 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 OR6C68A6NDL8 312 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 RP2O75695 350 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 RENP00797 406 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 GAAP10253 952 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 ZNF16P17020 682 aaPredicted RBP16.41■□□□□ 0.22
CLN3-260ENST00000637578 MPV17P39210 176 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 MAGEB1P43366 347 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 MMP15P51511 669 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 CHN2P52757 468 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 TMEM33P57088 247 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 PPP1CBP62140 327 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 CRMP1Q14194 572 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 LRRC36Q1X8D7 754 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 SPATA46Q5T0L3 261 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 LPCAT4Q643R3 524 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 TMEM154Q6P9G4 183 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 OR6V1Q8N148 313 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 ABHD4Q8TB40 342 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 YIPF5Q969M3 257 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 C1orf159Q96HA4 380 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 DDOQ99489 341 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 SOX7Q9BT81 388 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 FN3KQ9H479 309 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 RERGLQ9H628 205 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 RNPEPL1Q9HAU8 725 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 RPRD1BQ9NQG5 326 aaKnown RBP16.41■□□□□ 0.22
CLN3-260ENST00000637578 CMC2Q9NRP2 79 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 ASH2LQ9UBL3 628 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 KLHL21Q9UJP4 597 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 B9D1Q9UPM9 204 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 ORC6Q9Y5N6 252 aa16.41■□□□□ 0.22
CLN3-260ENST00000637578 LRP5LA4QPB2 252 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 OR6C6A6NF89 314 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 RIIAD1A6NNX1 92 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 KIAA1324LA8MWY0 1029 aaPredicted RBP16.4■□□□□ 0.22
CLN3-260ENST00000637578 DOK2O60496 412 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 IFNGP01579 166 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 TUBG1P23258 451 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 GCH1P30793 250 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 HIST1H3AP68431 136 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 CCDC92Q53HC0 331 aaPredicted RBP16.4■□□□□ 0.22
CLN3-260ENST00000637578 HIST2H3PS2Q5TEC6 136 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 DNM1P34Q6PK57 102 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 ARL9Q6T311 187 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 HIST2H3AQ71DI3 136 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 ZBTB46Q86UZ6 589 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 SLC37A3Q8NCC5 494 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 SNX33Q8WV41 574 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 IPCEF1Q8WWN9 437 aaPredicted RBP16.4■□□□□ 0.22
CLN3-260ENST00000637578 RACGAP1Q9H0H5 632 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 TUBG2Q9NRH3 451 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 ATPIF1Q9UII2 106 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 MALRD1Q5VYJ5 2156 aa16.4■□□□□ 0.22
CLN3-260ENST00000637578 ZAR1LA6NP61 321 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 CASQ2O14958 399 aaPredicted RBP16.39■□□□□ 0.21
CLN3-260ENST00000637578 LMX1BO60663 402 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 HMGN1P05114 100 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 ADH4P08319 380 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 ZNF3P17036 446 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 IL2RGP31785 369 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 RAD23AP54725 363 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 CCL8P80075 99 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 CHRFAM7AQ494W8 412 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms