RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, human

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VIM-210	ENST00000637053	PECR	Q9BY49	303 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	RNF26	Q9BY78	433 aa	Predicted RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	SLC25A51	Q9H1U9	297 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	DSN1	Q9H410	356 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	MAP1LC3A	Q9H492	121 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	CLMP	Q9H6B4	373 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF665	Q9H7R5	613 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	NIPAL2	Q9H841	368 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	FGF20	Q9NP95	211 aa	Predicted RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	ACP6	Q9NPH0	428 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	GDF3	Q9NR23	364 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	FBXO6	Q9NRD1	293 aa	Predicted RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	SPANXA1	Q9NS26	97 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	B3GNT2	Q9NY97	397 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	RASL12	Q9NYN1	266 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	TAS2R13	Q9NYV9	303 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	BFAR	Q9NZS9	450 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	RCC2	Q9P258	522 aa	Known RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	B3GAT1	Q9P2W7	334 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	THAP10	Q9P2Z0	257 aa	Predicted RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	GAGE2D	Q9UEU5	116 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	OR12D3	Q9UGF7	316 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	LSM7	Q9UK45	103 aa	Known RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	POMT2	Q9UKY4	750 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	UBQLN1	Q9UMX0	589 aa	Known RBP	2.61	□□□□□ -1.99
VIM-210	ENST00000637053	LAMP3	Q9UQV4	416 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	AMDHD2	Q9Y303	409 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	LOXL2	Q9Y4K0	774 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	COLEC10	Q9Y6Z7	277 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	MYO15B	Q96JP2	1530 aa		2.61	□□□□□ -1.99
VIM-210	ENST00000637053	CAMSAP1	Q5T5Y3	1602 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CCDC144A	A2RUR9	1427 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	EEA1	Q15075	1411 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	SMG6	Q86US8	1419 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053		A0A0G2JMP0	313 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	SMIM28	A0A1B0GU29	152 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TMEM150B	A6NC51	233 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	MYADML2	A6NDP7	307 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CXorf65	A6NEN9	183 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	LILRA5	A6NI73	299 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	DHRS7C	A6NNS2	312 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ANKRD65	E5RJM6	399 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053		F5H697	171 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TRAPPC2L	H3BP13	241 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CCL24	O00175	119 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	RGS16	O15492	202 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TMPRSS11D	O60235	418 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TPST1	O60507	370 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ZG16	O60844	167 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CNMD	O75829	334 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TRAPPC6A	O75865	159 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	SLC25A27	O95847	323 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	OXT	P01178	125 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CAT	P04040	527 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	HOXD4	P09016	255 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	GIP	P09681	153 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TFPI	P10646	304 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	MBL2	P11226	248 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	GPX3	P22352	226 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	GCA	P28676	217 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ADORA2B	P29275	332 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	FMO3	P31513	532 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	FOXN2	P32314	431 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	IFNGR2	P38484	337 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	RFC3	P40938	356 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	APOBEC1	P41238	236 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	LGALS7	P47929	136 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	GSK3B	P49841	420 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	SULT1A1	P50225	295 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	SULT1A2	P50226	295 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CDH12	P55289	794 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	WNT4	P56705	351 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	RPS20	P60866	119 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	RAB8A	P61006	207 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CKS1B	P61024	79 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	STXBP1	P61764	594 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	WDR5	P61964	334 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	RPL31	P62899	125 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ID2	Q02363	134 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	MFGE8	Q08431	387 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CD47	Q08722	323 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TWF1	Q12792	350 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	MAD2L1	Q13257	205 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	BIK	Q13323	160 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	GPR50	Q13585	617 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF235	Q14590	738 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	MEF2D	Q14814	521 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF169	Q14929	603 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	KPNB1	Q14974	876 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	SURF2	Q15527	256 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ELAVL1	Q15717	326 aa	Known RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	NSDHL	Q15738	373 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	PRSS8	Q16651	343 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF630	Q2M218	657 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	PLPPR5	Q32ZL2	321 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TTLL9	Q3SXZ7	439 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	CD300E	Q496F6	205 aa	Predicted RBP	2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TMEM128	Q5BJH2	165 aa		2.6	□□□□□ -1.99
VIM-210	ENST00000637053	TREML2	Q5T2D2	321 aa		2.6	□□□□□ -1.99

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms