RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 H0YHG0 523 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 PRODHO43272 600 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 SNAP29O95721 258 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 IFNA2P01563 188 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 LCKP06239 509 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 OR4A8P0C604 315 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 COX5BP10606 129 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 GGT2P36268 569 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 APOFQ13790 326 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 LRRC36Q1X8D7 754 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 CCDC92Q53HC0 331 aaPredicted RBP15.33■□□□□ 0.04
CLN3-247ENST00000636351 ELFN2Q5R3F8 820 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 LCN1P1Q5VSP4 162 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 SLC18B1Q6NT16 456 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 CFAP77Q6ZQR2 320 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 ZNF771Q7L3S4 317 aaPredicted RBP15.33■□□□□ 0.04
CLN3-247ENST00000636351 PHC2Q8IXK0 858 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 OR6N2Q8NGY6 317 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 OR1F12Q8NHA8 337 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 PTP4A1Q93096 173 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 IL4I1Q96RQ9 567 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 HDHD2Q9H0R4 259 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 TOR3AQ9H497 397 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 ZNF442Q9H7R0 627 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 CBLN4Q9NTU7 201 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 IMPAD1Q9NX62 359 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 CYB5R1Q9UHQ9 305 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 CMAHPQ9Y471 501 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 IGHV4-30-2A0A087WSY4 118 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 A8MV72 311 aaPredicted RBP15.32■□□□□ 0.04
CLN3-247ENST00000636351 ZNF593O00488 134 aaPredicted RBP15.32■□□□□ 0.04
CLN3-247ENST00000636351 SYNGR3O43761 229 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 ABHD16AO95870 558 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 SERPINF1P36955 418 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 CDC42P60953 191 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 SNRPD2P62316 118 aaKnown RBP15.32■□□□□ 0.04
CLN3-247ENST00000636351 ADIPOQQ15848 244 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 SLC35D3Q5M8T2 416 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 LINC01590Q5TEZ4 76 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 RGS7BPQ6MZT1 257 aaPredicted RBP15.32■□□□□ 0.04
CLN3-247ENST00000636351 ARL9Q6T311 187 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 UNQ6126/PRO20091Q6UXV3 157 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 FAM81AQ8TBF8 368 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 TMEM163Q8TC26 289 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 SLC7A6Q92536 515 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 SLC29A1Q99808 456 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 H2AFY2Q9P0M6 372 aaPredicted RBP15.32■□□□□ 0.04
CLN3-247ENST00000636351 FZR1Q9UM11 496 aa15.32■□□□□ 0.04
CLN3-247ENST00000636351 OR6C6A6NF89 314 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 PEX2P28328 305 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 GLRXP35754 106 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 WNT5AP41221 380 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 NAA10P41227 235 aaPredicted RBP15.31■□□□□ 0.04
CLN3-247ENST00000636351 RAD52P43351 418 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 CHRFAM7AQ494W8 412 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 LPCAT4Q643R3 524 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 DCXRQ7Z4W1 244 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 GALNT4Q8N4A0 578 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 ABHD4Q8TB40 342 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 C4orf45Q96LM5 186 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 MBOAT4Q96T53 435 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 COQ7Q99807 217 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 ATF6BQ99941 703 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 RHNO1Q9BSD3 238 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 CACNG6Q9BXT2 260 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 BCL2L14Q9BZR8 327 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 ELOVL3Q9HB03 270 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 ATPIF1Q9UII2 106 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 GRIP1Q9Y3R0 1128 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 ABCA1O95477 2261 aa15.31■□□□□ 0.04
CLN3-247ENST00000636351 SELENOFO60613 162 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 DBHP09172 617 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 PSKH1P11801 424 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 BMP4P12644 408 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 NUDT6P53370 316 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 UCP2P55851 309 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 ERVS71-1P61550 626 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 HIST1H3AP68431 136 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 EIF2B1Q14232 305 aaKnown RBP15.3■□□□□ 0.04
CLN3-247ENST00000636351 SPATA46Q5T0L3 261 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 HIST2H3PS2Q5TEC6 136 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 RFPL4BQ6ZWI9 263 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 HIST2H3AQ71DI3 136 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 BCDIN3DQ7Z5W3 292 aaKnown RBP15.3■□□□□ 0.04
CLN3-247ENST00000636351 GID4Q8IVV7 300 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 OR1J1Q8NGS3 322 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 SYT3Q9BQG1 590 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 COPS4Q9BT78 406 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 PLK3Q9H4B4 646 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 DCLRE1BQ9H816 532 aa15.3■□□□□ 0.04
CLN3-247ENST00000636351 A0A096LNT2 108 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 CCDC182A6NF36 153 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 B9A039 149 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 MRPL3P09001 348 aaKnown RBP15.29■□□□□ 0.04
CLN3-247ENST00000636351 SLC2A5P22732 501 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 SELENOVP59797 346 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 ECH1Q13011 328 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 TAF13Q15543 124 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 C6orf52Q5T4I8 152 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 C11orf71Q6IPW1 123 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms