RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 FAM81AQ8TBF8 368 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 TMEM163Q8TC26 289 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 ZMYND19Q96E35 227 aaPredicted RBP15.61■□□□□ 0.09
CLN3-243ENST00000635973 POM121L2Q96KW2 1035 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 IL4I1Q96RQ9 567 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 INTS14Q96SY0 518 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 SLC29A1Q99808 456 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 HDHD2Q9H0R4 259 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 TOR3AQ9H497 397 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 ZNF442Q9H7R0 627 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 DCLRE1BQ9H816 532 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 WDR76Q9H967 626 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 YAE1D1Q9NRH1 226 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 H2AFY2Q9P0M6 372 aaPredicted RBP15.61■□□□□ 0.09
CLN3-243ENST00000635973 CYB5R1Q9UHQ9 305 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 LOC100509620A0A075B734 347 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 KIAA1324LA8MWY0 1029 aaPredicted RBP15.6■□□□□ 0.09
CLN3-243ENST00000635973 ZNF593O00488 134 aaPredicted RBP15.6■□□□□ 0.09
CLN3-243ENST00000635973 SYNGR3O43761 229 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 GPRIN2O60269 458 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 CRLF1O75462 422 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 LCKP06239 509 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 OR4A8P0C604 315 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 PEX2P28328 305 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 RAD52P43351 418 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 LINC01590Q5TEZ4 76 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 ARL9Q6T311 187 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 UNQ6126/PRO20091Q6UXV3 157 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 CFAP77Q6ZQR2 320 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 GALNT4Q8N4A0 578 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 BCL2L14Q9BZR8 327 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 CMAHPQ9Y471 501 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 FBN3Q75N90 2809 aa15.6■□□□□ 0.09
CLN3-243ENST00000635973 OR6C6A6NF89 314 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 CD5LO43866 347 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 ABHD16AO95870 558 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 GLRXP35754 106 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 SERPINF1P36955 418 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 ADIPOQQ15848 244 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 LPCAT4Q643R3 524 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 C11orf71Q6IPW1 123 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 RGS7BPQ6MZT1 257 aaPredicted RBP15.59■□□□□ 0.09
CLN3-243ENST00000635973 DNM1P46Q6ZS02 220 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 DCXRQ7Z4W1 244 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 ABHD4Q8TB40 342 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 SLC7A6Q92536 515 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 MDFIQ99750 246 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 COQ7Q99807 217 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 ATF6BQ99941 703 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 PLK3Q9H4B4 646 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 C8orf4Q9NR00 106 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 GRIP1Q9Y3R0 1128 aa15.59■□□□□ 0.09
CLN3-243ENST00000635973 SLC2A5P22732 501 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 NAA10P41227 235 aaPredicted RBP15.58■□□□□ 0.08
CLN3-243ENST00000635973 UCP2P55851 309 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 SNRPD2P62316 118 aaKnown RBP15.58■□□□□ 0.08
CLN3-243ENST00000635973 HIST1H3AP68431 136 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 KRTAP1-1Q07627 177 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 EIF2B1Q14232 305 aaKnown RBP15.58■□□□□ 0.08
CLN3-243ENST00000635973 HIST2H3PS2Q5TEC6 136 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 HIST2H3AQ71DI3 136 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 GID4Q8IVV7 300 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 OR8J1Q8NGP2 316 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 FAM168AQ92567 244 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 C4orf45Q96LM5 186 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 MBOAT4Q96T53 435 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 ELOVL3Q9HB03 270 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 SMPD3Q9NY59 655 aaPredicted RBP15.58■□□□□ 0.08
CLN3-243ENST00000635973 ATPIF1Q9UII2 106 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 FZR1Q9UM11 496 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 GMPPBQ9Y5P6 360 aa15.58■□□□□ 0.08
CLN3-243ENST00000635973 IGHV4-30-2A0A087WSY4 118 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 SLC22A31A6NKX4 558 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 H7C417 338 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 SELENOFO60613 162 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 DBHP09172 617 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 PSKH1P11801 424 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 WNT5AP41221 380 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 ECH1Q13011 328 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 TAF13Q15543 124 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 TEX30Q5JUR7 227 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 NXNL2Q5VZ03 156 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 SPATC1Q76KD6 591 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 SHFQ7M4L6 423 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 DPY19L4Q7Z388 723 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 BCDIN3DQ7Z5W3 292 aaKnown RBP15.57■□□□□ 0.08
CLN3-243ENST00000635973 ZNF555Q8NEP9 628 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 OR1J1Q8NGS3 322 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 MAP6Q96JE9 813 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 HRASLS5Q96KN8 279 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 RDH12Q96NR8 316 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 COPS4Q9BT78 406 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 VCXQ9H320 206 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 ABCA1O95477 2261 aa15.57■□□□□ 0.08
CLN3-243ENST00000635973 CCDC182A6NF36 153 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 B9A039 149 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 F5H5K5 113 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 MRPL3P09001 348 aaKnown RBP15.56■□□□□ 0.08
CLN3-243ENST00000635973 CSF3P09919 207 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 SLC25A16P16260 332 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms