RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 OR4F15Q8NGB8 312 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 LGALS12Q96DT0 336 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 AMBNQ9NP70 447 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 LAMP5Q9UJQ1 280 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 EXOGQ9Y2C4 368 aaKnown RBP17.05■□□□□ 0.32
UPF3A-211ENST00000618700 C5orf49A4QMS7 147 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 PRR32B1ATL7 298 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 ZNF878C9JN71 531 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 DBHP09172 617 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 OR2T7P0C7T2 308 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 OPRL1P41146 370 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 HGFACQ04756 655 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 ZNF704Q6ZNC4 412 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-211ENST00000618700 RHOUQ7L0Q8 258 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 OR2T27Q8NH04 317 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 SLC7A6Q92536 515 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 KCNS3Q9BQ31 491 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 CDH20Q9HBT6 801 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 RTTNQ86VV8 2226 aa17.04■□□□□ 0.32
UPF3A-211ENST00000618700 PLCE1Q9P212 2302 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 ZNF670-ZNF695F2Z2N8 137 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 SSTR2P30874 369 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 WNT5AP41221 380 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 NKX6-1P78426 367 aaPredicted RBP17.03■□□□□ 0.32
UPF3A-211ENST00000618700 TLE4Q04727 773 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 RAB40BQ12829 278 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 SLC22A25Q6T423 547 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 LILRB1Q8NHL6 650 aaPredicted RBP17.03■□□□□ 0.32
UPF3A-211ENST00000618700 THEM6Q8WUY1 208 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 ASB17Q8WXJ9 295 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 DCLRE1CQ96SD1 692 aaKnown RBP17.03■□□□□ 0.32
UPF3A-211ENST00000618700 COPS4Q9BT78 406 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 PLCXD1Q9NUJ7 323 aa17.03■□□□□ 0.32
UPF3A-211ENST00000618700 HEATR1Q9H583 2144 aaKnown RBP17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ROS1P08922 2347 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 A0A1W2PQL4 384 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-211ENST00000618700 PHYHO14832 338 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 DENRO43583 198 aaKnown RBP17.02■□□□□ 0.32
UPF3A-211ENST00000618700 IGHA1P01876 353 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 PCSK6P29122 969 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ATP6V1E1P36543 226 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 CXCR4P61073 352 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ACTC1P68032 377 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ACTA1P68133 377 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ROM1Q03395 351 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ZNF672Q499Z4 452 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-211ENST00000618700 SSX6Q7RTT6 188 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 NUP37Q8NFH4 326 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 OR10H4Q8NGA5 316 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 CNBD2Q96M20 576 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 OR8B4Q96RC9 309 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 CLEC4MQ9H2X3 399 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-211ENST00000618700 Q9H521 79 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 CENPMQ9NSP4 180 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 PCDHGB1Q9Y5G3 927 aa17.02■□□□□ 0.32
UPF3A-211ENST00000618700 ACSM4P0C7M7 580 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 PRF1P14222 555 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 CCNOP22674 350 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 NR4A1P22736 598 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 GRB2P62993 217 aaKnown RBP17.01■□□□□ 0.31
UPF3A-211ENST00000618700 KLHL22Q53GT1 634 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 C6orf141Q5SZD1 244 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 KCTD18Q6PI47 426 aaPredicted RBP17.01■□□□□ 0.31
UPF3A-211ENST00000618700 DEGS2Q6QHC5 323 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF322Q6U7Q0 402 aaPredicted RBP17.01■□□□□ 0.31
UPF3A-211ENST00000618700 SPATC1Q76KD6 591 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF101Q8IZC7 436 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 OR52I1Q8NGK6 324 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 IPCEF1Q8WWN9 437 aaPredicted RBP17.01■□□□□ 0.31
UPF3A-211ENST00000618700 NEUROG1Q92886 237 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 C4orf45Q96LM5 186 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 TBX5Q99593 518 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 RHNO1Q9BSD3 238 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 JAM3Q9BX67 310 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 TTTY10Q9BZA0 68 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 FGF20Q9NP95 211 aaPredicted RBP17.01■□□□□ 0.31
UPF3A-211ENST00000618700 PCDHGB5Q9Y5G0 923 aa17.01■□□□□ 0.31
UPF3A-211ENST00000618700 M0R135 149 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 SLC1A7O00341 560 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 MAST4O15021 2626 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 XPNPEP2O43895 674 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 SMPD2O60906 423 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 FADS2O95864 444 aaKnown RBP17■□□□□ 0.31
UPF3A-211ENST00000618700 PIPP12273 146 aaPredicted RBP17■□□□□ 0.31
UPF3A-211ENST00000618700 GALK2Q01415 458 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF85Q03923 595 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 EGR3Q06889 387 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 SNTB2Q13425 540 aaKnown RBP17■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF684Q5T5D7 378 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 KRT80Q6KB66 452 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 LRRN1Q6UXK5 716 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 COLCA1Q6ZS62 124 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 RFPL4BQ6ZWI9 263 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 ACBD7Q8N6N7 88 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 BPIFB6Q8NFQ5 453 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 AKAP1Q92667 903 aaKnown RBP eCLIP17■□□□□ 0.31
UPF3A-211ENST00000618700 SPTSSAQ969W0 71 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF799Q96GE5 643 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 KCNJ15Q99712 375 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 PLEKHF2Q9H8W4 249 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms