RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 LAMA5O15230 3695 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 CFAP47Q6ZTR5 3102 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 ABCD4O14678 606 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 CSN2P05814 226 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 GAAP10253 952 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PNMTP11086 282 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 RFC3P40938 356 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 BDH1Q02338 343 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PLA2G7Q13093 441 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PAN3Q58A45 887 aaKnown RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DHRS13Q6UX07 377 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PXKQ7Z7A4 578 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR10H5Q8NGA6 315 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR1S2Q8NGQ3 325 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 THAP6Q8TBB0 222 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 TINAGL1Q9GZM7 467 aaPredicted RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 LOC100509620A0A075B734 347 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 SC5DO75845 299 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2A4O95047 310 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 SRMP19623 302 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 GALP22466 123 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 SLC2A5P22732 501 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 RBM34P42696 430 aaKnown RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF41P51814 821 aaPredicted RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 BLOC1S1P78537 153 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 DHODHQ02127 395 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OR10K2Q6IF99 312 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 TMEM71Q6P5X7 295 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 UNQ6126/PRO20091Q6UXV3 157 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 RBMS3Q6XE24 437 aaKnown RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 KRT77Q7Z794 578 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 PLPP7Q8NBV4 271 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OR5AK2Q8NH90 309 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2A7Q96R45 310 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 PDCD10Q9BUL8 212 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 WDR13Q9H1Z4 485 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 POLE3Q9NRF9 147 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 C19orf25Q9UFG5 118 aaPredicted RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 NDRG3Q9UGV2 375 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 FBXL3Q9UKT7 428 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 J3QRE1 110 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 GSTZ1O43708 216 aaPredicted RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 IGKV3-11P04433 115 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ANXA2P07355 339 aaKnown RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 CTLA4P16410 223 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF28P17035 718 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 MPLP40238 635 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ACTC1P68032 377 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ACTA1P68133 377 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 SRYQ05066 204 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 D2HGDHQ8N465 521 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 C12orf45Q8N5I9 185 aaPredicted RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF426Q9BUY5 554 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 EMC3Q9P0I2 261 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OR6C65A6NJZ3 312 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 K7ESF4 209 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNHIT1O43257 154 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 GLCEO94923 617 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 PRKXP51817 358 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 DMKNQ6E0U4 476 aaPredicted RBP12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 LIN54Q6MZP7 749 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OGFOD3Q6PK18 319 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 NAXDQ8IW45 347 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 OR51S1Q8NGJ8 323 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 TREM1Q9NP99 234 aa12.98□□□□□ -0.33
SHROOM1-208ENST00000617339 PCNX2A6NKB5 2137 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 TECTAO75443 2155 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 IGHV3-15A0A0B4J1V0 119 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 EIF3GO75821 320 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 NDUFB6O95139 128 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 WNT11O96014 354 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 ITGA3P26006 1051 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 SDHAP31040 664 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 PRSS12P56730 875 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 SHBQ15464 509 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 C1orf140Q5VVS0 124 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 SMIM19Q96E16 107 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 FABP1P07148 127 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 GTF2F2P13984 249 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 KLK2P20151 261 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 TAS2R43P59537 309 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 SPEM2Q0P670 501 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 OR4C16Q8NGL9 310 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 OR5B2Q96R09 309 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 PRRG4Q9BZD6 226 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 NIT2Q9NQR4 276 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 MRM2Q9UI43 246 aaKnown RBP12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 ST6GALNAC2Q9UJ37 374 aa12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 KLF2Q9Y5W3 355 aaPredicted RBP12.97□□□□□ -0.33
SHROOM1-208ENST00000617339 KANTRA0A1W2PQU2 76 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 NAP1L6A6NFF2 107 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 FRG2CA6NGY1 282 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 PIN1P1O15428 100 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 FARS2O95363 451 aaKnown RBP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 CPN1P15169 458 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 NFYBP25208 207 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 SNRPEP62304 92 aaKnown RBP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 TLE3Q04726 772 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 TRAM1Q15629 374 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 SGCBQ16585 318 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms