RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PTCHD4Q6ZW05 846 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 MUC20Q8N307 709 aaPredicted RBP8.27□□□□□ -1.09
VRK3-216ENST00000599342 RNF148Q8N7C7 305 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 ZNF283Q8N7M2 679 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 ATG16L2Q8NAA4 619 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 FAM216AQ8WUB2 273 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 APOBEC3DQ96AK3 386 aaPredicted RBP8.27□□□□□ -1.09
VRK3-216ENST00000599342 MCUR1Q96AQ8 359 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 C7orf34Q96L11 122 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 ZNF582Q96NG8 517 aaPredicted RBP8.27□□□□□ -1.09
VRK3-216ENST00000599342 ERMAPQ96PL5 475 aaPredicted RBP8.27□□□□□ -1.09
VRK3-216ENST00000599342 COQ7Q99807 217 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 SLC6A7Q99884 636 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 FAM107BQ9H098 131 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 HDHD2Q9H0R4 259 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 DCAF16Q9NXF7 216 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 PTTG3PQ9NZH4 202 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 MAGEL2Q9UJ55 1249 aa8.27□□□□□ -1.09
VRK3-216ENST00000599342 TANC2Q9HCD6 1990 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 IFNL4K9M1U5 179 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 IMPA2O14732 288 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 OR10H3O60404 316 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 TXNDC12O95881 172 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 IFNGR2P38484 337 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 MDH2P40926 338 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 CDKN2AP42771 156 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 SRP9P49458 86 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 ERFP50548 548 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 FXYD6P3P58550 94 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 HNRNPA0Q13151 305 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 HLXQ14774 488 aaPredicted RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 KCNMB1Q16558 191 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 MEP1BQ16820 701 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 ESCO2Q56NI9 601 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 FBXW12Q6X9E4 464 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 RBMS3Q6XE24 437 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 LRRC28Q86X40 367 aaPredicted RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 FAM86B1Q8N7N1 296 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 C3orf56Q8N813 242 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 OR10AD1Q8NGE0 317 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 OR13G1Q8NGZ3 307 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 C22orf15Q8WYQ4 148 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 POP5Q969H6 163 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 ZMYND19Q96E35 227 aaPredicted RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 PYURFQ96I23 114 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 DHRS1Q96LJ7 313 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 TSSK2Q96PF2 358 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 MRI1Q9BV20 369 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 IFT27Q9BW83 186 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 CDADC1Q9BWV3 514 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 MYLK2Q9H1R3 596 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 OR52D1Q9H346 318 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 GORASP2Q9H8Y8 452 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 NTN4Q9HB63 628 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 PATZ1Q9HBE1 687 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 DDX28Q9NUL7 540 aaKnown RBP8.26□□□□□ -1.09
VRK3-216ENST00000599342 OR5V1Q9UGF6 321 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 OPN4Q9UHM6 478 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 AUP1Q9Y679 476 aa8.26□□□□□ -1.09
VRK3-216ENST00000599342 TMEM89A2RUT3 159 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 TMEM178BH3BS89 294 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 GPANK1O95872 356 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 HLA-DQA2P01906 255 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 FABP3P05413 133 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 SELEP16581 610 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 FPR3P25089 353 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 ZFP36P26651 326 aaKnown RBP8.25□□□□□ -1.09
VRK3-216ENST00000599342 COMPP49747 757 aaPredicted RBP8.25□□□□□ -1.09
VRK3-216ENST00000599342 MMP16P51512 607 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 COX10Q12887 443 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 ZNF154Q13106 437 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 ZMYND11Q15326 602 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 RFX4Q33E94 735 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 SLC36A3Q495N2 470 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 OR2T2Q6IF00 324 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 CORO6Q6QEF8 472 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 BHLHE23Q8NDY6 225 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 OR8G5Q8NG78 346 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 OR2AJ1Q8NGZ0 328 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 MEGF10Q96KG7 1140 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 NSMCE2Q96MF7 247 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 SIGLEC11Q96RL6 698 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 NMNAT3Q96T66 252 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 PITX2Q99697 317 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 GPA33Q99795 319 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 HCAR1Q9BXC0 346 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 SRA1Q9HD15 236 aaKnown RBP8.25□□□□□ -1.09
VRK3-216ENST00000599342 GCM1Q9NP62 436 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 RPRD1BQ9NQG5 326 aaKnown RBP8.25□□□□□ -1.09
VRK3-216ENST00000599342 TMCC3Q9ULS5 477 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 B9D1Q9UPM9 204 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 POLR3KQ9Y2Y1 108 aaPredicted RBP8.25□□□□□ -1.09
VRK3-216ENST00000599342 LHFPL6Q9Y693 200 aa8.25□□□□□ -1.09
VRK3-216ENST00000599342 IGLV1-36A0A0B4J1U3 117 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 LRRC30A6NM36 301 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 CEACAM18A8MTB9 384 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 A8MXK9 166 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 IQCF6A8MYZ5 107 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 F5H0A9 414 aaPredicted RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 F5H5K5 113 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms