RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PCMT1P22061 227 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 CD79BP40259 229 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 GUCA1AP43080 201 aaPredicted RBP8.22□□□□□ -1.09
TRIM28-208ENST00000597172 MAP2K4P45985 399 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 HIST1H3AP68431 136 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 EMX1Q04741 257 aaPredicted RBP8.22□□□□□ -1.09
TRIM28-208ENST00000597172 FAM27E3Q08E93 113 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 SNTB1Q13884 538 aaKnown RBP8.22□□□□□ -1.09
TRIM28-208ENST00000597172 GALEQ14376 348 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 P2RY6Q15077 328 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 HIKESHIQ53FT3 197 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 SFRP5Q5T4F7 317 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 HIST2H3PS2Q5TEC6 136 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ANKRD16Q6P6B7 361 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF773Q6PK81 442 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 PRSS57Q6UWY2 283 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 STAC2Q6ZMT1 411 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 HIST2H3AQ71DI3 136 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 LINC00346Q8IVM7 164 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ACBD7Q8N6N7 88 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 NANOGP1Q8N7R0 232 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 WDR31Q8NA23 367 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF485Q8NCK3 441 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 OR10H5Q8NGA6 315 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 OR10S1Q8NGN2 331 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ST7LQ8TDW4 575 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 MAP6Q96JE9 813 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ABHD6Q9BV23 337 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 CDADC1Q9BWV3 514 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 PLEKHF2Q9H8W4 249 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 CCNB1IP1Q9NPC3 277 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 B3GNT2Q9NY97 397 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 GDF2Q9UK05 429 aaPredicted RBP8.22□□□□□ -1.09
TRIM28-208ENST00000597172 DYSFO75923 2080 aa8.22□□□□□ -1.09
TRIM28-208ENST00000597172 ROS1P08922 2347 aa8.21□□□□□ -1.09
TRIM28-208ENST00000597172 EEF1E1-BLOC1S5C9J1V9 151 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 RER1O15258 196 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 EEF1E1O43324 174 aaKnown RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 PTHP01270 115 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 MMP7P09237 267 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 SH3BGRP55822 239 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 TGFBR3Q03167 851 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 EIF2B1Q14232 305 aaKnown RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 RSPO1Q2MKA7 263 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 TBRG1Q3YBR2 411 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 PDLIM3Q53GG5 364 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 CCDC92Q53HC0 331 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 XAF1Q6GPH4 301 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 CFAP77Q6ZQR2 320 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 DCXRQ7Z4W1 244 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF454Q8N9F8 522 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 THEM6Q8WUY1 208 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 RNF166Q96A37 237 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF75AQ96N20 296 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 MNTQ99583 582 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 TTTY10Q9BZA0 68 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 CCDC90BQ9GZT6 254 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 ISG20L2Q9H9L3 353 aaKnown RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 NOX3Q9HBY0 568 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 PNRC2Q9NPJ4 139 aaKnown RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 INPP5EQ9NRR6 644 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 SLCO1C1Q9NYB5 712 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 ASH2LQ9UBL3 628 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 LAMP5Q9UJQ1 280 aa8.21□□□□□ -1.1
TRIM28-208ENST00000597172 LSM2Q9Y333 95 aaKnown RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 EXOSC1Q9Y3B2 195 aaKnown RBP8.21□□□□□ -1.1
TRIM28-208ENST00000597172 A0A087WXM4 84 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 TMEM129A0AVI4 362 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 CIB4A0PJX0 185 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF670-ZNF695F2Z2N8 137 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 PSMD9O00233 223 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 TMCC2O75069 709 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 RAD51DO75771 328 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 HLA-HP01893 362 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 HOXB1P14653 301 aaPredicted RBP8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ATP6V1B1P15313 513 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF32P17041 273 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 PSMB1P20618 241 aaKnown RBP8.2□□□□□ -1.1
TRIM28-208ENST00000597172 OR12D2P58182 307 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ACTC1P68032 377 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ACTA1P68133 377 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 TUBA1BP68363 451 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 TUBA4AP68366 448 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 PSG4Q00888 419 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ROM1Q03395 351 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 AQP6Q13520 282 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 DAZAP2Q15038 168 aaPredicted RBP8.2□□□□□ -1.1
TRIM28-208ENST00000597172 CDONQ4KMG0 1287 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 OR2G6Q5TZ20 316 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 TMEM154Q6P9G4 183 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF322Q6U7Q0 402 aaPredicted RBP8.2□□□□□ -1.1
TRIM28-208ENST00000597172 C22orf34Q6ZV56 151 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 KCTD8Q6ZWB6 473 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 TUBA1AQ71U36 451 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 BHLHA15Q7RTS1 189 aaPredicted RBP8.2□□□□□ -1.1
TRIM28-208ENST00000597172 SLC16A14Q7RTX9 510 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 SYT9Q86SS6 491 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 LRRC75A-AS1Q8N1F1 130 aa8.2□□□□□ -1.1
TRIM28-208ENST00000597172 C1orf162Q8NEQ5 155 aaPredicted RBP8.2□□□□□ -1.1
TRIM28-208ENST00000597172 GJC3Q8NFK1 279 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms