RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 HIST1H3AP68431 136 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 PPP1R8Q12972 351 aaKnown RBP12.98□□□□□ -0.33
TRIM28-203ENST00000593582 MICAQ29983 383 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 CR1LQ2VPA4 569 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 HIST2H3PS2Q5TEC6 136 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 CORO6Q6QEF8 472 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 RASSF6Q6ZTQ3 369 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 HIST2H3AQ71DI3 136 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 TRPM8Q7Z2W7 1104 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 OR5L1Q8NGL2 311 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 CCL17Q92583 94 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 PTP4A1Q93096 173 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 TIMD4Q96H15 378 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 CLPTM1LQ96KA5 538 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 THTPAQ9BU02 230 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 POFUT1Q9H488 388 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 TBC1D23Q9NUY8 699 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 TREM2Q9NZC2 230 aa12.98□□□□□ -0.33
TRIM28-203ENST00000593582 PURGQ9UJV8 347 aaKnown RBP12.98□□□□□ -0.33
TRIM28-203ENST00000593582 MALRD1Q5VYJ5 2156 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 WNT9BO14905 357 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 KITLGP21583 273 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 TNFSF4P23510 183 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 DVL1P1P54792 670 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-203ENST00000593582 MVKQ03426 396 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 SLC3A1Q07837 685 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 DBPQ10586 325 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-203ENST00000593582 TRAP1Q12931 704 aaKnown RBP12.97□□□□□ -0.33
TRIM28-203ENST00000593582 ECH1Q13011 328 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 AVPI1Q5T686 147 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 SLC18B1Q6NT16 456 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 IL17RELQ6ZVW7 336 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 PROKR2Q8NFJ6 384 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 OR2AJ1Q8NGZ0 328 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 BCAS4Q8TDM0 211 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 RAB1CQ92928 201 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 APOBEC3DQ96AK3 386 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-203ENST00000593582 HAVCR1Q96D42 359 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 CMBLQ96DG6 245 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 PITX2Q99697 317 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 PLA2G12AQ9BZM1 189 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 FN3KQ9H479 309 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 FAM53CQ9NYF3 392 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 TMEFF2Q9UIK5 374 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-203ENST00000593582 CACNG2Q9Y698 323 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.97□□□□□ -0.332e-10■■■■□ 25.2
TRIM28-203ENST00000593582 DNHD1Q96M86 4753 aa12.97□□□□□ -0.33
TRIM28-203ENST00000593582 MXRA5Q9NR99 2828 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 UBOX5O94941 541 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 CD55P08174 381 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 RAC2P15153 192 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 ZNF823P16415 610 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 TNFAIP6P98066 277 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-203ENST00000593582 CDK5R2Q13319 367 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 GK3PQ14409 553 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 PEG10Q86TG7 708 aaKnown RBP12.96□□□□□ -0.33
TRIM28-203ENST00000593582 GLCCI1Q86VQ1 547 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 LINC00346Q8IVM7 164 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 LNX2Q8N448 690 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 CYB561A3Q8NBI2 242 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 OR2T33Q8NG76 320 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 OR2Z1Q8NG97 314 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 OR2T4Q8NH00 348 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 CHID1Q9BWS9 393 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 TSSK6Q9BXA6 273 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 DGCR6LQ9BY27 220 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 VNN3Q9NY84 501 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 CYB5R1Q9UHQ9 305 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 KCNG2Q9UJ96 466 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 BAIAP2Q9UQB8 552 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 WIPI2Q9Y4P8 454 aa12.96□□□□□ -0.33
TRIM28-203ENST00000593582 DHRS12A0PJE2 317 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 ACOT8O14734 319 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 GYG2O15488 501 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 MSMBP08118 114 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 ANPEPP15144 967 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 HOXB6P17509 224 aaKnown RBP12.95□□□□□ -0.34
TRIM28-203ENST00000593582 TNFRSF1AP19438 455 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 THBS2P35442 1172 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 GGT2P36268 569 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 LMO4P61968 165 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 HLXQ14774 488 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-203ENST00000593582 DNAL1Q4LDG9 190 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 FBXW12Q6X9E4 464 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 CFAP77Q6ZQR2 320 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 CXXC5Q7LFL8 322 aaKnown RBP12.95□□□□□ -0.34
TRIM28-203ENST00000593582 OR10G2Q8NGC3 310 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 OR8D4Q8NGM9 314 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 OR51F2Q8NH61 342 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 TMEM186Q96B77 213 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 RAB39BQ96DA2 213 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 ATF6BQ99941 703 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 ZNF665Q9H7R5 613 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 LPAR2Q9HBW0 351 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 HIF1ANQ9NWT6 349 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 MRPL22Q9NWU5 206 aaKnown RBP12.95□□□□□ -0.34
TRIM28-203ENST00000593582 PTTG3PQ9NZH4 202 aa12.95□□□□□ -0.34
TRIM28-203ENST00000593582 COL6A5A8TX70 2615 aa12.94□□□□□ -0.34
TRIM28-203ENST00000593582 AQP12BA6NM10 295 aa12.94□□□□□ -0.34
TRIM28-203ENST00000593582 FAM157AC9JC47 383 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms