RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PLCXD3Q63HM9 321 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 NANOGP8Q6NSW7 305 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 PGAM4Q8N0Y7 254 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 METTL13Q8N6R0 699 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 C8orf31Q8N9H6 132 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 OR5W2Q8NH69 310 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 C9orf72Q96LT7 481 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 NAP1L5Q96NT1 182 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 PLA2G2FQ9BZM2 168 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 SLC7A5P2Q9GIP4 190 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 PIGUQ9H490 435 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 MRM3Q9HC36 420 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 LYRM4Q9HD34 91 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DDX19AQ9NUU7 478 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNRD1Q9P1U0 126 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DUX4Q9UBX2 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 HYOU1Q9Y4L1 999 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 WDR19Q8NEZ3 1342 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 IGKV2D-24A0A075B6R9 120 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 TSPAN11A1L157 253 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 NCF1BA6NI72 391 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 PDZK1P1A8MUH7 402 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 NCF1CA8MVU1 366 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 ANKRD63C9JTQ0 380 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 L7N2F9 121 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 ENTPD5O75356 428 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 RDH16O75452 317 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 FCN3O75636 299 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 VAMP5O95183 116 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 CTDNEP1O95476 244 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 CLTAP09496 248 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 UBCP0CG48 685 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 CTRB1P17538 263 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 TCN2P20062 427 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 RAB4AP20338 218 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 SSTR5P35346 364 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 RPS5P46782 204 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 ESRRGP62508 458 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 SEMG2Q02383 582 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 ILKQ13418 452 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 EBI3Q14213 229 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 KIR2DS1Q14954 304 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 FAM78AQ5JUQ0 283 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 AVPI1Q5T686 147 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 KHDRBS2Q5VWX1 349 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 CEMP1Q6PRD7 247 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 PLET1Q6UQ28 207 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 CALHM1Q8IU99 346 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 FAM71AQ8IYT1 594 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 NPWQ8N729 165 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 FAM184AQ8NB25 1140 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 OR10G2Q8NGC3 310 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 OR51E1Q8TCB6 317 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 GPX8Q8TED1 209 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF382Q96SR6 550 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 CALN1Q9BXU9 219 aa2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 PDP1Q9P0J1 537 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 MYEF2Q9P2K5 600 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-209ENST00000583441 SCN2AQ99250 2005 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 MTCL1Q9Y4B5 1905 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 GAKO14976 1311 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TTC41PQ6P2S7 1318 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TRAV6A0A075B6T7 132 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 A0A1B0GTQ1 180 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TMEM223A0PJW6 202 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TMEM120BA0PK00 339 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 NCBP2LA6PVI3 153 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 RSPH10B2B2RC85 870 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 SEMA3DO95025 777 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 CD160O95971 181 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 IFNW1P05000 195 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 RSPH10BP0C881 870 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 POLR2MP0CAP2 368 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 IL32P24001 234 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 CCT6AP40227 531 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF121P58317 390 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 DNAJC3Q13217 504 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 PTGES3Q15185 160 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 FAM83EQ2M2I3 478 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TCEAL5Q5H9L2 206 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF691Q5VV52 312 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 NCCRP1Q6ZVX7 275 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 BHLHA15Q7RTS1 189 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 SNX20Q7Z614 316 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 HORMAD1Q86X24 394 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 CBLN2Q8IUK8 224 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 H1FOOQ8IZA3 346 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 COX18Q8N8Q8 333 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 OR52E5Q8NH55 327 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 COQ8AQ8NI60 647 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 UBALD1Q8TB05 177 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 C15orf40Q8WUR7 153 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 LRRC29Q8WV35 223 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 PEX13Q92968 403 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TCEAL3Q969E4 200 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 ISG20Q96AZ6 181 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 BTN2A3PQ96KV6 586 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 TIMM17AQ99595 171 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 GPR21Q99679 349 aa2.29□□□□□ -2.04
SMCHD1-209ENST00000583441 SPNS1Q9H2V7 528 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms